DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4B and Kdm4A

DIOPT Version :9

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster


Alignment Length:404 Identity:256/404 - (63%)
Similarity:323/404 - (79%) Gaps:15/404 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 KMSEVPRIKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYADLDALNVTIP 66
            :.::||||..|||::|||::|..|:.|:||:|||.|||||:.||.|||||:||| |:|.:|:|||
  Fly    11 EQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRKSGY-DIDNINMTIP 74

  Fly    67 APICQVVTGKQGYYQQINI-QKKPLTVKQFSELASTERYATPKHFDFEDLERKYWKNITYVAPIY 130
            |||||||||..|.|||||| |::.:|::||.|.|::|.:.||:|||::||||||||||||::|:|
  Fly    75 APICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLY 139

  Fly   131 GADVSGSITDTDQDSWNINRLGTILDYVNKDYNIQIDGVNTAYLYFGMWKTTFAWHTEDMDLYSI 195
            .|||.||::|.|.|.|||.||.|||:.||.||||.|||||||||||||||::|||||||||||||
  Fly   140 AADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMDLYSI 204

  Fly   196 NYLHFGAPKTWYVVPPECGRKLEKVANQYFPASYKNCNAYLRHKMTLISPQILKQHDVPVSKITQ 260
            ||||||||||||.:||..||:|||:||:.|..:|:.||||||||||:|||::|:||::|.:||||
  Fly   205 NYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMTMISPKVLRQHNIPYNKITQ 269

  Fly   261 EAGEIMITFPFGYHAGFNHGFNCAESTNFAMERWIEYGKRAVQCTCSNDMVKISMDTFVKRFQSD 325
            ||||||||||||||||||||||.|||||||.:|||||||||..|.|.:|||||||:|||:|||.:
  Fly   270 EAGEIMITFPFGYHAGFNHGFNGAESTNFASKRWIEYGKRASICRCRSDMVKISMETFVRRFQPE 334

  Fly   326 RYDLWMEGRDVGRHPEDPPNAVLSAAPLPPHLDVLLCDKKMKKQCNPTKAKSFKE----RNPDLD 386
            |||.|::|:|:|.|||: |..:.:||  ||.|:      :.:||.|...|||.:|    |...|.
  Fly   335 RYDNWLKGQDMGCHPEE-PGKICAAA--PPTLN------EYEKQENLRAAKSEEESPQKRGCSLA 390

  Fly   387 LDEIQQNPNVPDDV 400
            .:..::|....:||
  Fly   391 GNGCERNAESAEDV 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 11..44 CDD:280526 19/32 (59%)
JmjC 173..289 CDD:202224 91/115 (79%)
Kdm4ANP_610331.1 JmjN 17..59 CDD:301729 25/41 (61%)
JmjC 182..298 CDD:202224 91/115 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446189
Domainoid 1 1.000 212 1.000 Domainoid score I2716
eggNOG 1 0.900 - - E1_COG5141
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 100 1.000 Inparanoid score I2177
Isobase 1 0.950 - 0 Normalized mean entropy S2611
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000582
OrthoInspector 1 1.000 - - mtm6370
orthoMCL 1 0.900 - - OOG6_100918
Panther 1 1.100 - - P PTHR10694
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2594
SonicParanoid 1 1.000 - - X490
1211.770

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