DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4B and Kdm4a

DIOPT Version :10

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_001423737.1 Gene:Kdm4a / 313539 RGDID:1306378 Length:1062 Species:Rattus norvegicus


Alignment Length:751 Identity:284/751 - (37%)
Similarity:397/751 - (52%) Gaps:126/751 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RIKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYADLDALNVTIPAPICQV 72
            ||..|.||.|||::|.:|:||:||||||:|||||||||.||.||.| |.|:|  ::.|||||.|:
  Rat    13 RIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRTS-YDDID--DLVIPAPIQQL 74

  Fly    73 VTGKQGYYQQINIQKKPLTVKQFSELASTERYATPKHFDFEDLERKYWKNITYVAPIYGADVSGS 137
            |||:.|.:.|.|||||.:||::|.::|::::|.||::.:||:||||||||:|:..|||||||:|:
  Rat    75 VTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNPPIYGADVNGT 139

  Fly   138 ITDTDQDSWNINRLGTILDYVNKDYNIQIDGVNTAYLYFGMWKTTFAWHTEDMDLYSINYLHFGA 202
            :.:...|.|||.||.||||.|.|:..|.|:||||.|||||||||:|||||||||||||||||||.
  Rat   140 LYEQHVDEWNIGRLKTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGE 204

  Fly   203 PKTWYVVPPECGRKLEKVANQYFPASYKNCNAYLRHKMTLISPQILKQHDVPVSKITQEAGEIMI 267
            ||:||.||||.|::||::|..:||.|.::|.|:||||||||||.:||::.:|..|:||||||.||
  Rat   205 PKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMI 269

  Fly   268 TFPFGYHAGFNHGFNCAESTNFAMERWIEYGKRAVQCTCSNDMVKISMDTFVKRFQSDRYDLWME 332
            |||:|||||||||||||||||||..|||||||:||.|:|..||||||||.||:|||.:||.||..
  Rat   270 TFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRRFQPERYKLWKA 334

  Fly   333 GRD--VGRHPEDPPNAV--LSAAPLPPHLDVLLCDKKMKKQCNPTKAKSFKERNPDLDLDEIQQN 393
            |:|  |..|....|.|.  |..:.|.|                    ::..|..|:.|.:..:|.
  Rat   335 GKDSTVIDHTLPTPEAAEFLKDSGLTP--------------------RAGNEECPEEDSEAAEQG 379

  Fly   394 PNVPDDVKAML-------KESVLTLDTGDLATDEADFPNEDAMSLQ--------SPANLKTKQEL 443
            ..  .|||..|       |...:.|:.....:....||.|:..|.|        :.|.::.....
  Rat   380 EE--GDVKRSLAKHRIGTKRHRVCLEIPQEVSQSELFPKEELSSGQYEMTECQATLAPVRPTHSS 442

  Fly   444 LEYIDDGTE----DDDEEEDFKRRKQKRRYDADYDDDWLASKRKTNSRNNRGRSPRTKDDRSISP 504
            :..::|...    .|..|..|:..|..:..:.|.|::..|:..                |.|::|
  Rat   443 VRQVEDSLPFPDYSDPTEVKFEELKNVKLEEEDEDEEPEAAAL----------------DLSVNP 491

  Fly   505 ASSTSSTSRGARRGKASGTPRKTPARRKKDSITTSPAVSSAATAVKTPTSAVVAGTTSIATTTTP 569
            .|..........:.|||            .|:.:|.:..|.::..:|..|....|......|...
  Rat   492 ESVEGRLVFSGSKKKAS------------SSLGSSSSQDSVSSDSETTESVSCQGQEKTVLTVHS 544

  Fly   570 PADGGGDAKKERQSLQFMQQSRKFEGKIPKLSQTSAATGGATAAAEASTSKSSQGQQQQIVYVNM 634
            .:.|.|.|.....|::..:.:.:      .:|:...|............:|.::|::|.:   :.
  Rat   545 YSRGDGKAAPGEPSVKRQRSAPR------SISEQELAEVADEYMLSLEENKKTKGRRQPL---SK 600

  Fly   635 LP---------------AANTLNGIPQQQQQQQYASTDGNVYQLQ----------NEILCDANGH 674
            ||               .:..|....:.::.:.:|.....::|.:          ||::.....|
  Rat   601 LPRHHPLVLQECGSDDETSEQLTPEEEAEETEAWAKPLSQLWQNRPPNFEAEKEFNELMAQQAPH 665

  Fly   675 AVTAATASYQT--------------TASSPQQQQQQ 696
            .  |....:||              .||.|..|.|:
  Rat   666 C--AVCMIFQTYHQVEFGGFSQSCGNASEPAAQPQR 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 5..50 CDD:128818 29/41 (71%)
JmjC 173..289 CDD:396791 86/115 (75%)
Kdm4aNP_001423737.1 JmjN 13..55 CDD:128818 29/41 (71%)
JmjC 175..291 CDD:396791 86/115 (75%)
PHD_JMJD2A 665..764 CDD:277050 9/37 (24%)
ePHD_JMJD2A 773..882 CDD:277183
Tudor_JMJD2A_rpt1 897..951 CDD:410534
Tudor_JMJD2A_rpt2 954..1009 CDD:410537
Blue background indicates that the domain is not in the aligned region.

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