DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4B and Kdm4b

DIOPT Version :10

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_001037701.2 Gene:Kdm4b / 301128 RGDID:1588576 Length:1099 Species:Rattus norvegicus


Alignment Length:677 Identity:274/677 - (40%)
Similarity:373/677 - (55%) Gaps:117/677 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RIKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYADLDALNVTIPAPICQV 72
            :|..||||.:||:||.:||||:||||||:|||||::||.||.||:: |.|:|  :|.|||||.||
  Rat    14 KIMTFRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKPRQT-YDDID--DVVIPAPIQQV 75

  Fly    73 VTGKQGYYQQINIQKKPLTVKQFSELASTERYATPKHFDFEDLERKYWKNITYVAPIYGADVSGS 137
            |||:.|.:.|.|||||.:||.::..||::|:|.||:|.||:|||||||||:|:|:||||||:|||
  Rat    76 VTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFVSPIYGADISGS 140

  Fly   138 ITDTDQDSWNINRLGTILDYVNKDYNIQIDGVNTAYLYFGMWKTTFAWHTEDMDLYSINYLHFGA 202
            :.|.|...|||..|.:|||.|.::....|:||||.|||||||||||||||||||||||||||||.
  Rat   141 LYDDDVAQWNIGNLRSILDMVERECGTIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGE 205

  Fly   203 PKTWYVVPPECGRKLEKVANQYFPASYKNCNAYLRHKMTLISPQILKQHDVPVSKITQEAGEIMI 267
            ||:||.:|||.|::||::|..:||.|.:.|:|:||||||||||.|||::.:|.|:|||||||.||
  Rat   206 PKSWYAIPPEHGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEFMI 270

  Fly   268 TFPFGYHAGFNHGFNCAESTNFAMERWIEYGKRAVQCTCSNDMVKISMDTFVKRFQSDRYDLWME 332
            |||:|||||||||||||||||||..|||:|||.|.||||..||||||||.||:..|.:||:.|.:
  Rat   271 TFPYGYHAGFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDMVKISMDVFVRILQPERYEQWKQ 335

  Fly   333 GRDVGRHPEDPPNAVLSAAPLPPHLD------VLLCDKKMKKQCNPTKA----KSFKERNPDLDL 387
            |||:.......|.|:.|     |.|.      ..|..|.:::|.:..::    |:.:||.|.|  
  Rat   336 GRDLTVLDHTRPTALSS-----PELSSWSASRTSLKAKLLRRQISVKESRPWRKAEEERRPSL-- 393

  Fly   388 DEIQQNPNVPDDVKAMLKESVLTLDTGDLATDEADFPNEDAMSLQSPANLKTKQELLEYIDDGTE 452
             |.::.|               |...|                   ||:.:.:.:         .
  Rat   394 -ERRREP---------------TRRPG-------------------PASHRRRSQ---------P 414

  Fly   453 DDDEEEDFKRRKQKRRYDADYDDDWLASKRKTNSRNNRGRSPRTKDDRSISP-----ASSTSSTS 512
            ...:.||.:...:.....|..|:....|:|:|        .|..:::..:||     |.......
  Rat   415 KKSKPEDSRSPGEATAGVAGLDEARGCSRRET--------MPEEEEEEELSPSQGHEAEGVEEDG 471

  Fly   513 RGARRGKASGTPRKTPARRKKDSITTSPAVSSAATAVKTPTS-----------AVVAGTTSIATT 566
            ||..|...:.:.:|||:......::..||:..|...::.|..           |...|....|..
  Rat   472 RGKPRPTKARSKKKTPSLLSPPLLSAPPALFPAEEVLRLPPQPKSPGPAMGPMAAEGGPPPTALN 536

  Fly   567 TTPPADGGGDAKKERQSLQFMQQSRKFEGKIPKLSQTSAATGGATAAAEASTSKSSQGQQQQIVY 631
            ..||...|.:.:...:.:            ||.|.....|             .||.|.::...:
  Rat   537 VVPPGVPGEETEVRPRPI------------IPMLYVLPRA-------------NSSDGDREHAAH 576

  Fly   632 VNMLPAANTLNGIPQQQQQQQYASTDG 658
            ..:.|    :...|:::.|.|...:.|
  Rat   577 PQLAP----MELGPEEEDQAQAGDSQG 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 5..50 CDD:128818 28/41 (68%)
JmjC 173..289 CDD:396791 88/115 (77%)
Kdm4bNP_001037701.2 JmjN 15..56 CDD:128818 28/40 (70%)
JmjC 176..292 CDD:396791 88/115 (77%)
PHA03247 <327..643 CDD:223021 64/361 (18%)
PHD_SF 686..789 CDD:473978
ePHD_JMJD2B 798..907 CDD:277184
Tudor_JMJD2B_rpt1 920..973 CDD:410535
Tudor_SF 977..1032 CDD:470623
Blue background indicates that the domain is not in the aligned region.

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