DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4B and Brpf3

DIOPT Version :9

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_001074784.1 Gene:Brpf3 / 268936 MGIID:2146836 Length:1204 Species:Mus musculus


Alignment Length:252 Identity:51/252 - (20%)
Similarity:86/252 - (34%) Gaps:77/252 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 PEDPPNAVLSAAPLPPHLDVLLCDKKMKKQCNPTKAKSFKERNPDLDLDEIQQNPNVPDDVKAML 404
            ||:..:...|..|.||.|:.......:.:|.:|....:.|..:.........::..|.|:  .:|
Mouse   820 PEEEGDRDDSKLPAPPTLEPTGPAPSLSEQESPPDPPTLKPISDSKPSSRFLKSRKVEDE--ELL 882

  Fly   405 KESVLTLDT-------GDLATDEADFPNEDA-----------------------MSLQ-SPANLK 438
            ::|.|.|.:       .|...|.....|.|:                       :.|| .|....
Mouse   883 EKSALQLGSEPLQCLLSDNGIDRLSLTNPDSHPDTPLGTVGRRTSVLFKKAKNGVKLQRGPDGTL 947

  Fly   439 TKQELLEYIDDGTEDD------DEEEDFKRRKQKRRYDADYDDDWLASKRKTNSRNNRGRSPRTK 497
            ...|     |.|.|||      .|:|.:.|::.:.|..:|.:.:               |||:.:
Mouse   948 ENGE-----DHGPEDDPASPASTEDEHYSRKRPRSRSCSDSEGE---------------RSPQQE 992

  Fly   498 DDRSI-------SPASSTSSTSRGARRGKA----SGTPRKTPARRKKDSITTSPAVS 543
            ::..:       :.:.|.|..|.|...|.|    ||.   ||.:|.:.    .||:|
Mouse   993 EETGVTNGFGKHTESGSDSECSLGLSGGLAFEAGSGL---TPPKRSRG----KPALS 1042

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 11..44 CDD:280526
JmjC 173..289 CDD:202224
Brpf3NP_001074784.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 76..127
COG5141 117..>603 CDD:227470
ePHD_BRPF3 269..386 CDD:277173
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 393..464
Bromo_brd1_like 592..689 CDD:99944
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 778..879 11/58 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 903..1015 22/131 (17%)
BR140_related 1073..1188 CDD:99900
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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