DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kdm4B and Mllt6

DIOPT Version :9

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:XP_006533395.1 Gene:Mllt6 / 246198 MGIID:1935145 Length:1109 Species:Mus musculus


Alignment Length:183 Identity:37/183 - (20%)
Similarity:76/183 - (41%) Gaps:38/183 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   485 NSRNNRGRSPRTKDDRSISPASSTSSTSRGARRGKASGTPRKTPARRKKD---SITTSPAVSSAA 546
            :.|.:|..||.|:      |....:...:|.::.:......|...:::.:   |:...|||    
Mouse   229 SGRRSRSASPSTQ------PEKHPTHHEKGQKKSRKDKERLKQKHKKRPESPPSVLAPPAV---- 283

  Fly   547 TAVKTPTSAVVAGTTSIA---TTTTPPADGGGDAKKERQSLQFMQQSRKFEGKIPKLSQTSAATG 608
                 ||:..|:..||.:   .:|...::...|:|..:.|...:....|..|....:|..::|: 
Mouse   284 -----PTADKVSSATSSSHHEASTQETSESSRDSKGRKSSSHSLSHKDKKLGTGKGVSSFTSAS- 342

  Fly   609 GATAAAEASTSKSSQGQQQQIVYVNMLPAANTLNGIP--------QQQQQQQY 653
             :::::.:|:|.||.|...|       ||.::|...|        :|.::.:|
Mouse   343 -SSSSSSSSSSSSSSGGPFQ-------PAGSSLQSSPDFAAFPKLEQPEEDKY 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 11..44 CDD:280526
JmjC 173..289 CDD:202224
Mllt6XP_006533395.1 PHD_AF10_AF17 7..54 CDD:277049
ePHD_AF17 61..185 CDD:277179
SR-25 229..>329 CDD:371095 22/114 (19%)
HALZ <737..763 CDD:390154
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.