DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4B and Kdm4b

DIOPT Version :10

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:XP_030105461.1 Gene:Kdm4b / 193796 MGIID:2442355 Length:1124 Species:Mus musculus


Alignment Length:705 Identity:279/705 - (39%)
Similarity:371/705 - (52%) Gaps:179/705 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RIKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYADLDALNVTIPAPICQV 72
            :|..||||.:||:||.:||||:||||||:|||||::||.||.||:: |.|:|  :|.|||||.||
Mouse    14 KIMTFRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKPRQT-YDDID--DVVIPAPIQQV 75

  Fly    73 VTGKQGYYQQINIQKKPLTVKQFSELASTERYATPKHFDFEDLERKYWKNITYVAPIYGADVSGS 137
            |||:.|.:.|.|||||.:||.::..||::|:|.||:|.||:|||||||||:|:|:||||||:|||
Mouse    76 VTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFVSPIYGADISGS 140

  Fly   138 ITDTDQDSWNINRLGTILDYVNKDYNIQIDGVNTAYLYFGMWKTTFAWHTEDMDLYSINYLHFGA 202
            :.|.|...|||..|.||||.|.::....|:||||.|||||||||||||||||||||||||||||.
Mouse   141 LYDDDVAQWNIGNLRTILDMVERECGTIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGE 205

  Fly   203 PKTWYVVPPECGRKLEKVANQYFPASYKNCNAYLRHKMTLISPQILKQHDVPVSKITQEAGEIMI 267
            ||:||.:|||.|::||::|..:||.|.:.|:|:||||||||||.|||::.:|.|:|||||||.||
Mouse   206 PKSWYAIPPEHGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEFMI 270

  Fly   268 TFPFGYHAGFNHGFNCAESTNFAMERWIEYGKRAVQCTCSNDMVKISMDTFVKRFQSDRYDLWME 332
            |||:|||||||||||||||||||..|||:|||.|.||||..||||||||.||:..|.:||:.|.:
Mouse   271 TFPYGYHAGFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDMVKISMDVFVRILQPERYEQWKQ 335

  Fly   333 GRDVGRHPEDPPNAVLSAAPLPPHLDVLLCDKKMKKQCNPTKAKSFKERNPDLDLDEIQQNPNVP 397
            |||                     |.||       ....||                        
Mouse   336 GRD---------------------LTVL-------DHTRPT------------------------ 348

  Fly   398 DDVKAMLKESVLTLDTGDLATDEADFPNEDAMSLQSPANLKTKQELLEYIDDGTEDDDEEEDFKR 462
                        .|.:.:|::..|...:..|..|:...::|                 |...:::
Mouse   349 ------------ALSSPELSSWSASRTSIKAKLLRRQISVK-----------------ESRPWRK 384

  Fly   463 RKQKRRYDADYDDDWLASKRKTNSRNNRGRS--PRTKDDRSISPASSTSSTS-----RGARRGKA 520
            .:::||.:         ..|:....::|.||  .::|.:.|.||..:|:..|     ||..||:|
Mouse   385 AEEERRRE---------PTRRPGPASHRRRSQPKKSKPEESRSPGEATAGVSTLDEARGCSRGEA 440

  Fly   521 -------------------------SGTPRKTPARRKKDSIT-TSPAVSSAATAV---------- 549
                                     .|.||.|.||.||.:.: :||.:.||..|:          
Mouse   441 MPEDEEEEELLPSQGHEAEGVEEDGRGKPRPTKARNKKKTPSPSSPPLLSAPPALFPTEEVLRPP 505

  Fly   550 ---KTP-----TSAVVAGTTSIATTTTPPADGGGDAKKERQSLQFMQQSRKFEGKIPK---LSQT 603
               |:|     ..|...|.........||.....:|:...:.:            ||.   |.:|
Mouse   506 PQPKSPGPAMGPMAAEGGPPPTPLNVVPPGAPVEEAEVRPRPI------------IPMLYVLPRT 558

  Fly   604 SAATGGATAAAEASTSKSSQGQQQQIVYVNMLPAANTLNGIPQQQQQQQYASTDG 658
            |:..|....:|.|..:....|                    |:::.|.|...:.|
Mouse   559 SSTDGDREHSAHAQLAPMELG--------------------PEEENQAQAGDSQG 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 5..50 CDD:128818 28/41 (68%)
JmjC 173..289 CDD:396791 88/115 (77%)
Kdm4bXP_030105461.1 JmjN 15..56 CDD:128818 28/40 (70%)
JmjC 176..292 CDD:396791 88/115 (77%)
PHD_SF 680..814 CDD:473978
PHD_SF 823..932 CDD:473978
Tudor_JMJD2B_rpt1 945..998 CDD:410535
Tudor_SF 1002..1057 CDD:470623
Blue background indicates that the domain is not in the aligned region.

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