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Protein Alignment Ir31a and Grik1

DIOPT Version :9

Sequence 1:	NP_001260346.1	Gene:	Ir31a / 318912	FlyBaseID:	FBgn0051718	Length:	648	Species:	Drosophila melanogaster
Sequence 2:	NP_001104587.1	Gene:	Grik1 / 29559	RGDID:	2732	Length:	949	Species:	Rattus norvegicus

Alignment Length:	555	Identity:	105/555 - (18%)
Similarity:	209/555 - (37%)	Gaps:	98/555 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   130 LFPLNLNYV------GPNAQITYVNETADGYAYWDIHSKGRHLKSNLEINLIATLINDTLNIARD 188
            |.|..:|.:      |...:||: |:| ||            |:.:.::::|:.....|...:.:
  Rat   356 LGPRFMNLIKEARWDGLTGRITF-NKT-DG------------LRKDFDLDIISLKEEGTEKASGE 406

  Fly   189 IF-HL----QSIDFRGQFNGLTL------RGASVIDKEDIISNEQ--IESILSRP-----TKDAG 235
            :. ||    :.|......:||.:      |..::.|.   ::|..  :.:||..|     ..|..
  Rat   407 VSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSNNITDS---LANRTLIVTTILEEPYVMYRKSDKP 468

  Fly   236 VAAFIKYHYELLGLLRERFN-----FTVNF--------RNSRG-WAGRLGNTTFRLGLLGIVMRN 286
            :....::....|.||:|..|     :.|..        :|.:| |.          |::..::.:
  Rat   469 LYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWN----------GMVKELIDH 523

  Fly   287 EADIAASGAFNRINRFAEFDTIHQSWKFETAFLYRYTSDLDTHGKSGNFLSPFSDRVWLFCLLT- 350
            .||:|.:.......|....|..........:.|||..:  .|:....:||:|.|..:|::.||.
  Rat   524 RADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPN--GTNPGVFSFLNPLSPDIWMYVLLAC 586

  Fly   351 LGAFSIIWVLFEIIDYKILRIRVNSQKLEH-LNQKSSVICIKTTCIERILQTFGACCQQGLDPNP 414
            ||...:::|:.....|:...        .| .|..|.|:....|.:.......||..|||.:..|
  Rat   587 LGVSCVLFVIARFTPYEWYN--------PHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMP 643

  Fly   415 VDRSVRFLVMTLFLFSLVMYNYYTSSVVGGLLSSSDQGPSTVDEITASPLKISFEDI--GYYKVL 477
            ...|.|.:....:.|:|::.:.||:::...|.....:.|....:..|...||.:..:  |.....
  Rat   644 KALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTF 708

  Fly   478 FRESQNRSITRLIEKKLSSSRSLNELPIFSHIEDAVPYLKAGGFAFHCEVVDAYPVISEYFDANE 542
            |::|:    ....||..:...|..:..:..:.::.:..:....:|...|....     ||.....
  Rat   709 FKKSK----ISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSI-----EYVTQRN 764

  Fly   543 ICDLREVSGLMEVEILNWILHKNSQYTEIFKTAMCNAQEKGFVERILRRRQIKKPAC-----QSL 602
             |:|.::.||::.:.........|.|.:....|:...||:|.: .:::.:..:...|     :..
  Rat   765 -CNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKL-HMMKEKWWRGNGCPEEDSKEA 827

  Fly   603 YTVYPVSLSGVLPGFVILICGFGASLLLLCLEKVY 637
            ..:...::.|:   |::|..|...|:.:...|.:|
  Rat   828 SALGVENIGGI---FIVLAAGLVLSVFVAIGEFLY 859

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.