DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir31a and glr-6

DIOPT Version :9

Sequence 1:NP_001260346.1 Gene:Ir31a / 318912 FlyBaseID:FBgn0051718 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_741822.2 Gene:glr-6 / 180955 WormBaseID:WBGene00001617 Length:844 Species:Caenorhabditis elegans


Alignment Length:797 Identity:160/797 - (20%)
Similarity:262/797 - (32%) Gaps:289/797 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 IIPSMEESVV----------TNFV---------KSLVKTKQAIVFSCLFKDFKEISLALMRINQF 64
            :.||||.|.:          .|||         |.|::|...:          |.|.||:|.:  
 Worm   130 LYPSMEYSQLMERLINLWRWDNFVYIYSNYDAPKQLIETLSRL----------EKSPALLRAH-- 182

  Fly    65 VSVVNLNQSYSLTSILTRENYARTSVMVNARC-SGSSELLFEASENR---YFN--------KTYQ 117
                .|:.|...|::..|:...|.      || ...:.:|.|.|.|.   :|:        ..:.
 Worm   183 ----TLDDSMMATALALRDTCDRN------RCWPKKNRVLIELSPNETLTFFDASLKLGMISVHN 237

  Fly   118 WFL------------------------------WGV----------------------------- 123
            |||                              |..                             
 Worm   238 WFLITALDDLNDHLSQYTHNGMRVSLLTVSKEKWNQNDLAIKLPDMYQEYLAKIPSNPRTPFKDF 302

  Fly   124 ----------------------DLEVQSLF--PLNLNYVGPNAQITYVNETAD----GYAYWDIH 160
                                  |.|....|  |:...:.|...:|:: |.|:|    ....|::.
 Worm   303 AFIFDSILLACQAGDRRIISCGDNEAVKKFKLPIVKPFKGLTGKISF-NGTSDRSDSELHIWEMG 366

  Fly   161 SKGRHLKSNL---------EINLIATLINDTLNIARDIFHLQSIDFRGQFNGLTLRGASVIDKED 216
            ..|..|.:.:         |:.::|.      ||.....|.|:    ......||:..|:.:|..
 Worm   367 ITGAGLHTGIWKSTWEGSKELTMLAK------NIPGTHEHYQA----SVRESRTLKVTSIHEKPY 421

  Fly   217 IISNEQIESIL-SRPTKDAGVAAFIKYHYELLGLLRE--RFNFTVNFRNSRGWAGRLGNTTFRLG 278
            :     ||.|: ....|..|      :..:||..|.|  .||:|:.......:..|...|....|
 Worm   422 V-----IEKIMPDGRIKHEG------FCVDLLDKLAEMLHFNYTLKIVKDNKYGERKNGTDEWDG 475

  Fly   279 LLGIVMRNEADIAASGAFNRINRFAEFDTIHQSWKFETAFLYRYTSDL--DTHGKSGN----FLS 337
            ::|.::|.:||:|.:.......|....|       |...||....|.|  ..:.||.:    ||.
 Worm   476 MIGEILRGDADMAVAPITVTATRLEVID-------FTDPFLQLGISMLMRQPNPKSSSSLTRFLW 533

  Fly   338 PFSDRVWLFCLLTLGAFSIIWVLFEIIDYKILRIRVNSQKLEHLNQKSSVICIKTTCIERILQT- 401
            |.|..||.|..:.    ::|..|...: ..:|..:.::.:.:..|....::||       :|:. 
 Worm   534 PLSASVWTFSAIA----TVITALLVTV-AAVLSPKESTAEFKIQNSVWYLVCI-------LLRAG 586

  Fly   402 FGACCQQGLDPNPVDRSVRFLVMTLFLFSLVMYNYYTSSVVGGLLSSSDQGPSTVDEITASPLKI 466
            .|..||.|        :.|.:....:.|:||:...||::....|         |||. .:.|.. 
 Worm   587 SGYNCQAG--------ATRLISAVWWSFTLVLIAQYTANFAALL---------TVDR-KSMPFN- 632

  Fly   467 SFEDIG------YYKVL-------FRESQNRSITRLIEKKLSS-------------SRSLNELPI 505
            |||::|      :..:|       |:.|:..:..||.|:..|:             :|.|||..:
 Worm   633 SFEELGNQTEYNFGSILGGSTMQFFKYSRIETFRRLWERMQSAEPSAFVGTNHEGVNRVLNEKYV 697

  Fly   506 FSHIEDAVPYLKAGGFAFHCEVVDAYPVISEYFDANEICDLREVSGLMEVEIL-----NWILHKN 565
            |. :|.|              .:|        :...:.|:|..|..:    :|     :..|.|.
 Worm   698 FL-MESA--------------TLD--------YQVTQNCNLTRVGNV----VLGSNGYSIALPKG 735

  Fly   566 SQYTEIFKTAMCNAQEKGFVERILRRRQIKK--PACQS-----LYTVYPVSLSGVLPGFVILICG 623
            |::.|.....:.:..|||.: .:|:....||  ..|||     |.|.  :....|...|::|..|
 Worm   736 SKWREKLTRQILDLNEKGII-LMLKNNWWKKSQQECQSSEPEDLQTA--LGAENVYGLFLLLALG 797

  Fly   624 FGASLLLLCLEKVYAHF 640
            .|..:|...||  :.||
 Worm   798 SGIGVLCAVLE--HTHF 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir31aNP_001260346.1 Lig_chan 401..624 CDD:278489 56/261 (21%)
glr-6NP_741822.2 PBP1_iGluR_non_NMDA-like 21..394 CDD:380591 46/292 (16%)
PBP2_iGluR_Kainate 409..764 CDD:270432 93/431 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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