DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir31a and Gria4

DIOPT Version :9

Sequence 1:NP_001260346.1 Gene:Ir31a / 318912 FlyBaseID:FBgn0051718 Length:648 Species:Drosophila melanogaster
Sequence 2:XP_006509904.1 Gene:Gria4 / 14802 MGIID:95811 Length:912 Species:Mus musculus


Alignment Length:560 Identity:122/560 - (21%)
Similarity:209/560 - (37%) Gaps:103/560 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 W--GVDLEVQSLFPLNLNYVGPNAQITY----VNETADGY----------AYWDIHSKGRHLKSN 169
            |  |:|:| ::|..:.:..:..|.|..:    ||.|.|.:          .||:...|       
Mouse   339 WGQGIDME-RTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDK------- 395

  Fly   170 LEINLI---ATLINDTLNIARDIFHLQSIDFRGQFNGLTLRGASVIDK---EDIISNEQIE---- 224
              :.||   .||.|||..|......:.:|          :....|:.|   |....|::.|    
Mouse   396 --LVLIQDAPTLGNDTAAIENRTVVVTTI----------MESPYVMYKKNHEMFEGNDKYEGYCV 448

  Fly   225 SILSRPTKDAGVAAFIKYHYELLGLLRERFNFTVNFRNSRGWAGRLGNTTFRLGLLGIVMRNEAD 289
            .:.|...|..|    |||...::              ....:..|..:|....|::|.::..:|:
Mouse   449 DLASEIAKHIG----IKYKIAIV--------------PDGKYGARDADTKIWNGMVGELVYGKAE 495

  Fly   290 IAASGAFNRINRFAEFDTIHQSWKFETAFLYRYTSDL---DTHGKSG--NFLSPFSDRVWLFCLL 349
            ||.:.....:.|....|       |...|:....|.:   ....|.|  :||.|.:..:|: |::
Mouse   496 IAIAPLTITLVREEVID-------FSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWM-CIV 552

  Fly   350 --TLGAFSIIWVLFEIIDYKILRIRVNSQKLEHLNQKSSVICIKTTCIERILQTFGACCQQGLDP 412
              .:|...:::::.....|:.........|....:|..:...|    ...:..:.||..|||.|.
Mouse   553 FAYIGVSVVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGI----FNSLWFSLGAFMQQGCDI 613

  Fly   413 NPVDRSVRFLVMTLFLFSLVMYNYYTSSVVGGLLSSSDQGPSTVDEITASPLKISFE--DIGYYK 475
            :|...|.|.:....:.|:|::.:.||:::...|.......|....|..|...:|::.  |.|..|
Mouse   614 SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTK 678

  Fly   476 VLFRESQNRSITRLIEKKLSSSRSLNELPIFSH--IEDAVPYLKA-GGFAFHCEVVDAYPVISEY 537
            ..||    ||...:.||..:..||. |..:|:.  .|......|: |.|||..|     ..::||
Mouse   679 EFFR----RSKIAVYEKMWTYMRSA-EPSVFTRTTAEGVARVRKSKGKFAFLLE-----STMNEY 733

  Fly   538 FDANEICDLREVSGLMEVEILNWILHKNSQYTEIFKTAMCNAQEKGFVERILRRRQIKKPAC--- 599
            .:..:.||..:|.|.::.:.......|.|........|:....|.|.::::..:....|..|   
Mouse   734 IEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGECGPK 798

  Fly   600 --QSLYTVYPVSLSGVLPGFVILICGFGASLLLLCLEKVY 637
              .|......:|||.|...|.||:.|.|.::|:..:|..|
Mouse   799 DSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir31aNP_001260346.1 Lig_chan 401..624 CDD:278489 59/232 (25%)
Gria4XP_006509904.1 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611 15/70 (21%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 86/430 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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