DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir31a and Gria2

DIOPT Version :9

Sequence 1:NP_001260346.1 Gene:Ir31a / 318912 FlyBaseID:FBgn0051718 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:715 Identity:129/715 - (18%)
Similarity:243/715 - (33%) Gaps:213/715 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 YQW----FLWGVDLEVQSLFPLNLNYVGPNAQITYVN----------ETADGYAYWDIH-SKGRH 165
            |||    :|:..|..:.:|..:..:......|:|.:|          ||... .:.|:. .|.|.
Mouse   143 YQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRS-LFQDLELKKERR 206

  Fly   166 LKSNLEINLIATLINDTLNIARDI--FH--LQSIDF------RGQFNGLTLRGASVIDKEDIISN 220
            :..:.|.:.:..:::..:.|.:.:  :|  :.::.|      :.||.|..:.|..::|.:|.:.:
Mouse   207 VILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVS 271

  Fly   221 EQIE--SILSRPTKDAGVAAFIKY----HYELLGLLRERFNFTVNFRNSRGWAGRLGNTTFRL-- 277
            :.||  |.|..........|.|||    .|:.:.::.|.|.   |.|..|....|.||....|  
Mouse   272 KFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFR---NLRKQRIEISRRGNAGDCLAN 333

  Fly   278 ---------------------GLLGIV-----------MRNEADIAASGAFNRINRFAEFD---- 306
                                 ||.|.:           ..|..::..:|. .:|..::|.|    
Mouse   334 PAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVDKMVV 397

  Fly   307 ----------------------TIHQS---------------WKFE-------------TAFLYR 321
                                  ||.:|               .::|             ..|.|:
Mouse   398 TLTELPSGNDTSGLENKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYK 462

  Fly   322 YT---------SDLDT-----------HGKSG--------------------------------- 333
            .|         .|.||           :||:.                                 
Mouse   463 LTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKK 527

  Fly   334 ---------NFLSPFSDRVWLFCLL--TLGAFSIIWVLFEIIDYKILRIRVNSQKLEHLNQ-KSS 386
                     :||.|.:..:|: |::  .:|...:::::.....|:     .::::.|...: :||
Mouse   528 PQKSKPGVFSFLDPLAYEIWM-CIVFAYIGVSVVLFLVSRFSPYE-----WHTEEFEDGRETQSS 586

  Fly   387 VICIKTTCIERILQTFGACCQQGLDPNPVDRSVRFLVMTLFLFSLVMYNYYTSSVVGGLLSSSDQ 451
            ....:......:..:.||..|||.|.:|...|.|.:....:.|:|::.:.||:::...|......
Mouse   587 ESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV 651

  Fly   452 GPSTVDEITASPLKISFE--DIGYYKVLFRESQNRSITRLIEKKLSSSRSLNELPIFSHIEDAVP 514
            .|....|..:...:|::.  |.|..|..||    ||...:.:|..:..||...........:.|.
Mouse   652 SPIESAEDLSKQTEIAYGTLDSGSTKEFFR----RSKIAVFDKMWTYMRSAEPSVFVRTTAEGVA 712

  Fly   515 YLK--AGGFAFHCEVVDAYPVISEYFDANEICDLREVSGLMEVEILNWILHKNSQYTEIFKTAMC 577
            .::  .|.:|:..|     ..::||.:..:.||..:|.|.::.:.......|.|........|:.
Mouse   713 RVRKSKGKYAYLLE-----STMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLAVL 772

  Fly   578 NAQEKGFVERILRRRQIKKPAC-----QSLYTVYPVSLSGVLPGFVILICGFGASLLLLCLEKVY 637
            ...|:|.::::..:....|..|     .|......:|||.|...|.||:.|.|.::|:..:|..|
Mouse   773 KLSEQGVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 837

  Fly   638  637
            Mouse   838  837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir31aNP_001260346.1 Lig_chan 401..624 CDD:278489 52/231 (23%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 50/259 (19%)
PBP2_iGluR_AMPA 413..794 CDD:270433 65/395 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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