DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir31a and Gria1

DIOPT Version :9

Sequence 1:NP_001260346.1 Gene:Ir31a / 318912 FlyBaseID:FBgn0051718 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001106796.1 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus


Alignment Length:575 Identity:109/575 - (18%)
Similarity:206/575 - (35%) Gaps:111/575 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 WGVDLEVQSLFPLNLNYVGPNAQITYVNETA--------------DG---YAYW----------- 157
            ||..:::|.... .:.:.|....:.: ||..              ||   ..||           
Mouse   331 WGQGIDIQRALQ-QVRFEGLTGNVQF-NEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAAT 393

  Fly   158 DIHSKGRHLKSNLEINLIATLINDTLNIARDIFHLQSIDFRGQFNGLTLRGASVIDKEDIISNEQ 222
            |..:.|.:........::.|::.|.        ::.......||.|                |::
Mouse   394 DAQAGGDNSSVQNRTYIVTTILEDP--------YVMLKKNANQFEG----------------NDR 434

  Fly   223 IESILSRPTKDAGVAAFIKYHYELLGLLRERFNFTVNFRNSRGWAGRLGNTTFRLGLLGIVMRNE 287
            .|.......  |.:|..:.|.|.|..:...::.  ....:::.|.|.:|...:          ..
Mouse   435 YEGYCVELA--AEIAKHVGYSYRLEIVSDGKYG--ARDPDTKAWNGMVGELVY----------GR 485

  Fly   288 ADIAASGAFNRINRFAEFDTIHQSWKFETAFLYRYTSDL---DTHGKSG--NFLSPFSDRVWLFC 347
            ||:|.:.....:.|....|       |...|:....|.:   ....|.|  :||.|.:..:|: |
Mouse   486 ADVAVAPLTITLVREEVID-------FSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWM-C 542

  Fly   348 LL--TLGAFSIIWVLFEIIDYKILRIRVNSQKLEH-LNQKSSVICIKTTCIERILQTFGACCQQG 409
            ::  .:|...:::::.....|:     .:|::.|. .:|.:|....:......:..:.||..|||
Mouse   543 IVFAYIGVSVVLFLVSRFSPYE-----WHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQG 602

  Fly   410 LDPNPVDRSVRFLVMTLFLFSLVMYNYYTSSVVGGLLSSSDQGPSTVDEITASPLKISFE--DIG 472
            .|.:|...|.|.:....:.|:|::.:.||:::...|.......|....|..|...:|::.  :.|
Mouse   603 CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAG 667

  Fly   473 YYKVLFRESQNRSITRLIEKKLSSSRSLNELPIFSHIEDAVPYLK--AGGFAFHCEVVDAYPVIS 535
            ..|..||    ||...:.||..:..:|..........|:.:..::  .|.:|:..|     ..::
Mouse   668 STKEFFR----RSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYAYLLE-----STMN 723

  Fly   536 EYFDANEICDLREVSGLMEVEILNWILHKNSQYTEIFKTAMCNAQEKGFVERILRRRQIKKPACQ 600
            ||.:..:.||..:|.|.::.:.......|.|........|:....|:|.::::..:....|..|.
Mouse   724 EYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRGPVNLAVLKLSEQGVLDKLKSKWWYDKGECG 788

  Fly   601 SLYT-----VYPVSLSGVLPGFVILICGFGASLLLLCLEKVYAHFGPRK----FC 646
            |..:     ...:|||.|...|.|||.|.|.::|:..:|..|......|    ||
Mouse   789 SKDSGSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYKSRSESKRMKGFC 843

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir31aNP_001260346.1 Lig_chan 401..624 CDD:278489 53/231 (23%)
Gria1NP_001106796.1 PBP1_iGluR_AMPA_GluR1 26..389 CDD:107385 10/59 (17%)
ANF_receptor 37..372 CDD:279440 6/42 (14%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 79/440 (18%)
Glutamate binding. /evidence=ECO:0000250 492..494 0/1 (0%)
Lig_chan 538..817 CDD:278489 61/293 (21%)