DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG43672 and ABCA1

DIOPT Version :9

Sequence 1:NP_788912.3 Gene:CG43672 / 318910 FlyBaseID:FBgn0263747 Length:1690 Species:Drosophila melanogaster
Sequence 2:NP_850354.2 Gene:ABCA1 / 818768 AraportID:AT2G41700 Length:1882 Species:Arabidopsis thaliana


Alignment Length:2040 Identity:414/2040 - (20%)
Similarity:731/2040 - (35%) Gaps:545/2040 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FCLLVWKNFQKQKHNKLVLILSLVLPVMSSLFLLFIRSSSDSNMRDYSIRAEAE-LLEFSWSSLI 72
            |..::.||:..:..:..|....::||.:..|.|:.:|:..|:.:.......:.: ::|      :
plant     8 FKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDKDTVVE------V 66

  Fly    73 GKIQE----RRAKMASKQRNFTTNVFIPDIRVAFAPNSNAALRRLMGDALGKLSMSEDKIVD--F 131
            ||...    ...|:...:.:|          :||||:::..  ..|.|.| .|...|.::|.  |
plant    67 GKGNSPSFPEVLKLLLAEGDF----------LAFAPDTDET--NNMIDIL-SLKFPELRLVTKIF 118

  Fly   132 ENCNDMRIHAASEHYLASVC--FRNV-DESLNGL-------PTVLNFAIIMPSELRNYEDTWIGD 186
            ::..::..:..|.||  .||  .||. :..:.|.       |.:.:::|       ....||...
plant   119 KDDIELETYITSAHY--GVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSI-------RLNHTWAFA 174

  Fly   187 SWKETTTLMDRDVAEEDEFDEDGYT----DYMGEGFVPLQYHISMQFLRATASKVEKLPKVVMR- 246
            .:....::||.:....::.:....|    .|...||:.||..:. .|:...:.:...||..... 
plant   175 GFPNVKSIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVD-SFIIFASQQNNDLPLSHSNL 238

  Fly   247 ----RFNENPNVLLS-------------------EGIGTSVV-LLILLGFMFPVTILTTLIVEER 287
                || |.|..|.|                   :.|..||: ||.||||:||::.|.:..|.|:
plant   239 SSALRF-ELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLISYSVFEK 302

  Fly   288 ELGQRYMLKILNASATLQMAAWFFNVFTHFLITSLLITILLK---IEWNGATAAVNKCPWPILLC 349
            |...|..|.::.....:...:||......|.:.|.:||....   .:::..|         ::..
plant   303 EQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDKT---------LVFT 358

  Fly   350 FLISYGCSVTSLIILMTSAMRRSRVAMVMAPIIWILLALPLLSKKELLSDGPDVFYGFATVLLCN 414
            :...:|.|...|..::::...|::.|:.:..:.::....|..:..:   :...:.......||..
plant   359 YFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVND---ESVSMVLKVVASLLSP 420

  Fly   415 VSFSRGLSKIFYIEDYTLGVTIGKYMFYRVSKSDFGIFVPIVCFYVQTIFCTLLAMIFENNAYFW 479
            .:|:.|.......|...:|:     .:..:.::..|:          :.|..||.|:.::..|..
plant   421 TAFALGSINFADYERAHVGL-----RWSNIWRASSGV----------SFFVCLLMMLLDSILYCA 470

  Fly   480 LAIRVKNLLKKYHATR--------SAVGR----LKRQIP-----------EVS--------FSKT 513
            |.:.:..:|.:.:..|        ...||    |:.:||           ||:        |...
plant   471 LGLYLDKVLPRENGVRYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQGEPFDPVFESI 535

  Fly   514 SAE--------ALIEFRGVWQKYSN---STYVVQDITLNVYAGEVVALLGHNASGKSTIIKMLYG 567
            |.|        ..|:.|.:.:.|::   :...|..:.|.:|..::::|||||.:||||.|.||.|
plant   536 SLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGAGKSTTISMLVG 600

  Fly   568 RTRPKLGEIYLSGFNIVTQRKEALKNSSISMSYKTLFTELVVLDHLVFLSRLRGLSKTEAKLEAK 632
            ...|..|:..:.|.:|:|...|..|...:...:..||.||.|.:||...:.|:|:.:...|....
plant   601 LLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKGVEEGSLKSTVV 665

  Fly   633 ALLRYLKLEDWEKTLVNDLTIGQRRVLQFLCAFAGGNQIVILDKPFDGIDEQRTSLFYSLILDQK 697
            .:...:.|.|...|||..|:.|.:|.|....|..|.::::|||:|..|:|.....|.:.||...|
plant   666 DMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIK 730

  Fly   698 KNRSIFFTSNNQKVASGIADRIFVLSKGKLQAFGTVKKLCRMLNESYRLII-------------- 748
            |.|.|..|:::...|..:.|||.:::.|.|:..|:...|.......|.|.:              
plant   731 KGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYGVGYTLTLVKTSPTVSVAAHIV 795

  Fly   749 ------------FGNEKCSFKDVYAFMATF---IPEIEMDSILADCASFLVKHKYHTELINLIEN 798
                        .||| .|||...|.:..|   ..|||      .|    :|:......|:.||:
plant   796 HRHIPSATCVSEVGNE-ISFKLPLASLPCFENMFREIE------SC----MKNSVDRSKISEIED 849

  Fly   799 LARLKND--------LNVYSFE-----IHECSID------DILASLYTR---------DKSTLEF 835
                 :|        ::|.:.|     :..|::|      ||..|..|:         .||::  
plant   850 -----SDYPGIQSYGISVTTLEEVFLRVAGCNLDIEDKQEDIFVSPDTKSSLVCIGSNQKSSM-- 907

  Fly   836 GQPGL----------------------------------------------------QTLLASRQ 848
             ||.|                                                    :.|...|.
plant   908 -QPKLLASCNDGAGVIITSVAKAFRLIVAAVWTLIGFISIQCCGCSIISRSMFWRHCKALFIKRA 971

  Fly   849 QSAKR-------RFIIPTMYLLEEL---------RQLLIADTRNWFLPILKLTLPSLVVVWTLSM 897
            :||.|       :||||.::||..|         .|..|..|..:|.|:|........:.:.||:
plant   972 RSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPDQKSITLTTAYFNPLLSGKGGGGPIPFDLSV 1036

  Fly   898 P-------YFWHNCRQPGHIT---FP-----MSDHGDGIILMQKDTLDSELLVASEMYAKVGVTE 947
            |       |......||...|   ||     ::|..|.    ...||...||..||..       
plant  1037 PIAKEVAQYIEGGWIQPLRNTSYKFPNPKEALADAIDA----AGPTLGPTLLSMSEFL------- 1090

  Fly   948 VDKTVDITTFIYNYEYK-NSLLSDADIMEAVIFSNVQIEVLFNTKWPHTAPDSLAQALNSLAVAF 1011
                  :::|..:|:.: .|:|.|....:    .::...||.|....|..|..: ..:::..:..
plant  1091 ------MSSFDQSYQSRYGSILMDGQHPD----GSLGYTVLHNGTCQHAGPIYI-NVMHAAILRL 1144

  Fly  1012 IDGDAGIKVEL--EVLPFSTIHTLQLHLNIDGYDLIFASCLSFCFCFI---WSIPLLHMTLSRDG 1071
            ..|:..:.::.  ..||.:....:|.| ::|.:..  |..::..|.||   :::|::.   .|:.
plant  1145 ATGNKNMTIQTRNHPLPPTKTQRIQRH-DLDAFSA--AIIVNIAFSFIPASFAVPIVK---EREV 1203

  Fly  1072 RYNYVELIAGMPTIVLIVAFLIYELLVVLLALFPINIAVIFFHWDLLMDSNIHIYSVYVMFIIAA 1136
            :..:.:||:|:..:...::..:::.:..   |||...|:|.|:                      
plant  1204 KAKHQQLISGVSVLSYWLSTYVWDFISF---LFPSTFAIILFY---------------------- 1243

  Fly  1137 CVFSLNILITIMPISDMPFVYLKVLLAYSLGI------LVYIAVKELRPFTNPNTAHFLLLDFHP 1195
             .|.|...|.|...  :|.|.:  ||.|.|.|      |.:.       ||..:.|..::|..|.
plant  1244 -AFGLEQFIGIGRF--LPTVLM--LLEYGLAIASSTYCLTFF-------FTEHSMAQNVILMVHF 1296

  Fly  1196 FYALLHNLMRIASISEKIWLCSDRQIYETSVYADQCNTIPNCCDDDAQEFYHLRYLCCVYLLL-- 1258
            |..|:  ||.|:.:...|...:....|..:.:    ...|..|..|.        |..:.||.  
plant  1297 FSGLI--LMVISFVMGLIPATASANSYLKNFF----RLSPGFCFSDG--------LASLALLRQG 1347

  Fly  1259 --------VVVW------------ISIFIFLKSHMVKRRPRQPKY------FWDSDPDSKYDQNI 1297
                    |..|            .|||.||.:..::..|.|...      :|         ||:
plant  1348 MKDKSSHGVFEWNVTGASICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWW---------QNL 1403

  Fly  1298 LHIME---PSELENTWIHEKSRVST---------LERNHI-----ESKALHVEHLSVFF------ 1339
            ....:   .|..|.........:||         .||:.:     ::..|::::|...:      
plant  1404 KAFKQGAGSSSTEPLLKDSTGAISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHH 1468

  Fly  1340 GLKAAIKHIDFMVNRYQVMSVFGANGTGKSVLLKTILGIYTPSSG-RIISSKTVPFKSKDLDSCH 1403
            |.|.|::.:.|.|...:.....|.||.||:..|..:.|..||:|| ..|..|.:....|.:.. |
plant  1469 GPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQ-H 1532

  Fly  1404 MVGYSAQEFQTMQLMTILETWDLILRIRRSKQISFRAEATKLCKIFGLYKYRFNSLSICSQGVLK 1468
             :||..|.....:.:|:.|..:|..||:...........|:....|.|.|:........|.|..:
plant  1533 -IGYCPQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKR 1596

  Fly  1469 RLSLGIALMSDAELILLDDPFTHLDIVSQRSMLHIIHDL-RRRGHSIIYTCSDTAYSTPAL--RM 1530
            :||:.||::.|..:::||:|.|.:|.|::|.|..:|..| .|.|.:.:...:.:.....||  |:
plant  1597 KLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRI 1661

  Fly  1531 ATLSYPGIAVIGEREEMQQNYYSSYYM---------------------------VETRIHLAEL- 1567
            ..:....:..||..:.::..|.:...:                           .:.|..|.:| 
plant  1662 GIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLE 1726

  Fly  1568 ---------------GSPIDFDSQSTE------AKEDRAGTTGTLLRHKHQEFSAAFTDS----- 1606
                           .|.|....:..:      ..|.|..|....|..:...|....::.     
plant  1727 VCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQLFRDG 1791

  Fly  1607 -------ADRW----KYLKLCGVIENVFPHAIIKNVSFPRVCFWLS-SHMYPMSR----IVDTL- 1654
                   |:.|    |:..|...|::.||.|..|:      |..|| .:..|...    :.|.. 
plant  1792 GIPLPIFAEWWLTKEKFSALDSFIQSSFPGATFKS------CNGLSIKYQLPFGEGGLSLADAFG 1850

  Fly  1655 ----HRNKQDFYSFSVSQPSVNSVF 1675
                :||:.....:|:||.::.::|
plant  1851 HLERNRNRLGIAEYSISQSTLETIF 1875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43672NP_788912.3 rim_protein <266..>732 CDD:130324 119/510 (23%)
ABC_subfamily_A 519..737 CDD:213230 68/220 (31%)
P-loop_NTPase 1330..1517 CDD:422963 53/194 (27%)
ABCA1NP_850354.2 ABC2_membrane_3 <290..474 CDD:289468 33/210 (16%)
ABC_subfamily_A 549..770 CDD:213230 68/220 (31%)
drrA 556..874 CDD:130256 88/333 (26%)
ABC2_membrane_3 <1118..1381 CDD:289468 63/320 (20%)
Zinc_peptidase_like <1215..1382 CDD:301362 43/217 (20%)
EcfA2 1450..1676 CDD:224047 58/227 (26%)
ABC_subfamily_A 1453..1679 CDD:213230 58/227 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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