DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG43672 and Abca13

DIOPT Version :9

Sequence 1:NP_788912.3 Gene:CG43672 / 318910 FlyBaseID:FBgn0263747 Length:1690 Species:Drosophila melanogaster
Sequence 2:XP_038948786.1 Gene:Abca13 / 289797 RGDID:1305895 Length:5037 Species:Rattus norvegicus


Alignment Length:1870 Identity:373/1870 - (19%)
Similarity:658/1870 - (35%) Gaps:509/1870 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FCL-------------LVWKNFQKQKHNKL-------------------------VLILSLVLPV 35
            |||             |||...:...|.|:                         :.|||.....
  Rat  3263 FCLKLYQEILQSPNGALVWSFLKPVLHGKILYTPNSPEINEVIQKANYTFYFVDKIKILSETFLK 3327

  Fly    36 MSSLFLLFIRSSSDSNM--------RDYSIRAEAE-LLEFSWSSLIGKIQERRAKMASKQRNFTT 91
            |||||    :.|.:..|        |:..||...| .|......|...:|....|:.....:...
  Rat  3328 MSSLF----QESGNGQMFKQLQDALRNKFIRNFVESQLHIDMDKLTEDLQTYGQKLDKMFNHMEA 3388

  Fly    92 NVFIPDIRVAFAPNSNAALRRLMGDALGKLS----MSEDKIVDFENCNDMRIHAASEH--YLASV 150
            ..|                 :.:|..|..||    :...:.|:..:..:.:.|...:.  :|||:
  Rat  3389 GNF-----------------QFLGGILANLSSCVLLDRFQAVETVDTLETKAHELMQQNSFLASI 3436

  Fly   151 CF------RNVDESLNGLPTVLNFAI---IMPSELRNYEDTWIGDSWKETTTLMDRDVAEEDEFD 206
            .|      |::..:.:.||..:.:.|   |:.| :|.  |.....|||          .......
  Rat  3437 IFNSSLGHRHIRSAPHKLPPHVTYTIRTNILYS-MRT--DMIKNPSWK----------FHPQNLP 3488

  Fly   207 EDGYT-DYMGEGFVPLQYHISMQFLRATASKVEKLPKVVMRRFNENP---NVLLSEGIGTSVVLL 267
            ..|:. :|:   |||||..|....:.....: |.|......:....|   :.|....:|....|:
  Rat  3489 ASGFKYNYI---FVPLQDMIERAIIVVQTGQ-ESLEPTAQAQAAPYPCHTSDLFLNNVGFFFPLI 3549

  Fly   268 ILLGFMFPVTILTTLIVEERELGQRYMLKILNASATLQMAAWFFNVFTHFLITSLLITILLKIEW 332
            ::|.:|..|..:...:|.|||:.....::|:.....:...:||........::|..:.::||:  
  Rat  3550 MMLTWMVSVASMVRKLVYEREIQIEEYMRIMGLHPVIHFLSWFLENMATLALSSAALALILKM-- 3612

  Fly   333 NGATAAVNKCPWPILLCFLISYGCSVTSLIILMTSAMRRSRVAMVMAPIIWILLALP---LLSKK 394
            :|.....:..   |:..:|:::|.|...|...::....::..|.:...:.:::..||   ||...
  Rat  3613 SGIFMHSDAF---IIFLYLLNFGVSAVMLSYFLSVFFNKANTAALCTSLGYMISFLPYVVLLVLH 3674

  Fly   395 ELLSDGPDVFYGFA-TVLLCNVS---FSRGLSKIFYIEDYTLGVT-------------------- 435
            ..||        || ..|||.:|   |.:|:..|.::|....|:.                    
  Rat  3675 NQLS--------FALQTLLCLLSTTAFGQGVFFITFLEGQEEGIQWGNMYRAPEPGGMTFGWVCW 3731

  Fly   436 ----------IGKYMFYRVSKSDFGI----FVPIVCFYVQTIF-------CTLLAMIFENNAYFW 479
                      :|.:.|..:....||:    :.|....|.::|.       |:|.:.:|..|..|.
  Rat  3732 MILFDSILYFLGGWYFSNLVPGTFGLGKPWYFPFTASYWKSICGLMERRRCSLSSGLFFFNEDFG 3796

  Fly   480 LAIRVKNLLKKYHATRSAVGRLKRQIPEVSFSKTSAEALIEFRGVWQKYSNSTYVVQDITLNVYA 544
                     .|..:.::..|.::...|.|        |||   .|.::|.:....||::||..:.
  Rat  3797 ---------NKGLSQQNGPGEMEGGSPGV--------ALI---SVTKEYEDHKVAVQELTLTFHR 3841

  Fly   545 GEVVALLGHNASGKSTIIKMLYGRTRPKLGEIYLSGFNIVTQRKEALKNSSISMSYKTLFTELVV 609
            .::.||||.|.:||:|||.||.|...|..|.|.::|.|:.|...:..:...:...:..|...|.|
  Rat  3842 DQITALLGTNGAGKTTIISMLMGLFPPTSGTIIVNGKNLQTDFSKVREELGVCPQHDVLLDNLTV 3906

  Fly   610 LDHLVFLSRLRG--LSKTEAKLEAKALLRYLKLEDWEKTLVNDLTIGQRRVLQFLCAFAGGNQIV 672
            .:||:..:.::.  .:..|.:.:....|..::|...:......|:.|.:|.|....||.|.::.|
  Rat  3907 REHLMLFASIKAPWWTNKELRQQVNKTLEEVELTQHQHKPARVLSGGMKRKLSIGIAFMGMSKTV 3971

  Fly   673 ILDKPFDGIDEQRTSLFYSLILDQKKNRSIFFTSNNQKVASGIADRIFVLSKGKLQAFGTVKKLC 737
            :||:|..|:|.......::::|..:|.|:|.||:::...|..::|.:.||.:|:|:.:.....|.
  Rat  3972 VLDEPSSGVDPCSRRSLWNILLKYRKGRTIIFTTHHLDEAEVLSDHVAVLQQGRLRCYAPPAGLK 4036

  Fly   738 RMLNESYRL-------IIFGNEKCSFKDVYAFMATFIPEIEM-DSILADCASFLVKHKYHTELIN 794
            ....:...|       ::...|......|.:.:..:||:..: ||...:....:.|....|....
  Rat  4037 ETYGQGLTLTLSKQPSVLESQEPKDVARVTSLIQVYIPQAFLKDSNGGELTYTIPKDADKTCFKG 4101

  Fly   795 LIENLARLKNDLNVYSFEIHECSIDDILASLY--TRDKS-------------------------- 831
            |.:.|.:....|::..:.|.:.:::::...|.  |..||                          
  Rat  4102 LCQALDQNLQHLHLTGYGISDTTLEEVFLMLLQDTNKKSYITPDNKLESQNEKPVGPCLRHCGSL 4166

  Fly   832 --TLEFGQP----GLQTLLASRQQSAKRRFIIPTMYLLEELRQLLIADTRNWFLPILKLTLP-SL 889
              ||....|    |.|.||.......::|       ||..||... :.|.:.|||:|.:.|. .|
  Rat  4167 MRTLPDSLPEPMGGCQLLLGQAGALLRKR-------LLHTLRAWK-STTSDLFLPVLFVALAMGL 4223

  Fly   890 VVVWTLSMPY---------------------------------------------------FWHN 903
            .:|..|::.|                                                   .|| 
  Rat  4224 FMVQPLAITYPPLKLTPGHYETAEAYFFSSGNHDPDLTHVLLRRFGDQDPVCSDAQWVNSSSWH- 4287

  Fly   904 CRQP----------GHITFPMSDHGD-------GIILMQKDTLDSE--LLVASEMYAK------- 942
             |.|          |.:..|....|.       |..|:.....|.|  |||.|   ||       
  Rat  4288 -RDPYSGPEFQDSCGCLKCPNKSAGAPYLTNCLGHTLLNLSGYDVEEYLLVPS---AKPRLGGWS 4348

  Fly   943 VGVTEVDKTVDITT-------------------------------------------------FI 958
            .||...::..|:.|                                                 .:
  Rat  4349 FGVQIPNEAEDVKTNTSKPKTLAKVWYNQKGFHSLPSYLNHLNNLILWQNLPAHAADWRQYGITL 4413

  Fly   959 YNYEYKNSLLSDADIMEAVIFSNVQIEVLFNTKWPHTAPDSLAQALNSLAVAFIDGDAGIK--VE 1021
            |::.|..:||::..|:|::....|.:.::...       ..|:.::.|..|.  |...|.|  ..
  Rat  4414 YSHPYGGALLNEDRILESIRQCGVALCIVLGF-------SILSASIGSSVVK--DRVTGAKRLQH 4469

  Fly  1022 LEVLPFSTIHTLQLHLNIDGYDLIFASCLSFCFCFIWSIPLLHMTLSRDGRYNYVELIAGMPTIV 1086
            :..|.:.|...:...     ||::| ..:|.|.|                    |.:||...   
  Rat  4470 ISGLGYRTYWLINFL-----YDMLF-YLVSVCLC--------------------VAIIAAFQ--- 4505

  Fly  1087 LIVAFLIYELL---VVLLALFPINIAVIFFHWDLLMDSNIHIYS----VYVMFIIAACVFSLNIL 1144
             :.||...|.|   .:|||||  ..|:|  .|..|:.   .|:|    .::.:|      |||.:
  Rat  4506 -LTAFTFRENLAATALLLALF--GYAMI--PWMYLIS---RIFSSSDVAFISYI------SLNFI 4556

  Fly  1145 --ITIMPISDMPFVYLKVLLAYSLGILVYIAVKELRPFTNPNTAHFLLLDFHPFYALLHNLMRIA 1207
              :..|.::.||.:...:..|.||. .:|..:|.:  ||           ..|.:.|...|    
  Rat  4557 FGLCTMLMTTMPRLLAIISKAQSLQ-KIYDVLKWV--FT-----------IFPQFCLGQGL---- 4603

  Fly  1208 SISEKIWLCSDRQIYETSVYADQCNTIPNCCDDDAQEFYHLRYLCCVYLLLVVVWISIFIFLKSH 1272
                 |.||.::..|:.:         .|...|.....:.:.:|..:::.|.:.  ..|:.|...
  Rat  4604 -----IELCYNQIKYDLT---------HNFGIDSYVSPFEINFLGWIFVELTLQ--GTFLLLLRI 4652

  Fly  1273 MVK----RRPRQPKYFWDSDPDSKYDQNILHIMEPSELENTWIHEKSRVSTLERNHIESKA---- 1329
            ::.    |.||.....          |:|:..::..::|.    |:.||       :|.:.    
  Rat  4653 LLHGDCLRWPRGHSAL----------QDIVKPVKDIDVEK----EQMRV-------LEGRTGGDM 4696

  Fly  1330 -----LHVEHLSVFFGLKAAIKHIDFMVNRYQVMSVFGANGTGKSVLLKTILGIYTPSSGRIISS 1389
                 |...:..|..|...|:..|...::|.:...:.|.||.|||...|.:.|...|||| ..:.
  Rat  4697 LVLCNLSKSYRGVCRGKTTAVHGISLGISRGECFGLLGVNGAGKSTTFKILNGETPPSSG-YATI 4760

  Fly  1390 KTVPFKSKDLDSCH----MVGYSAQEFQTMQLMTILETWDLILRIRRSKQISFRAEATKLCKIFG 1450
            :|......||.|..    ::||..|:....:|:|..|......|:|...:.:....|..|.:...
  Rat  4761 RTPQGDMVDLASAGKVGVLIGYCPQQDALDELLTGWEHLQYYCRLRGIPKQNIPEVAADLVRRLH 4825

  Fly  1451 LYKYRFNSLSICSQGVLKRLSLGIALMSDAELILLDDPFTHLDIVSQRSMLHIIHDLRRRGHSII 1515
            |..:....::..|.|..::||..:||:...:::|||:|.:.:|..|:|.:...|....|.|.:.:
  Rat  4826 LELHVDKPVATYSGGTRRKLSTALALVGKPDILLLDEPSSGMDPCSKRYLWQTITQEVRDGCAAV 4890

  Fly  1516 YTCSDTAYSTPAL--RMATLSYPGIAVIGEREEMQQNYYSSYYMVETRIH 1563
            .| |.:.....||  |:|.:.......:|..:.: :|.:...|.|:..:|
  Rat  4891 LT-SHSMEECEALCTRLAIMVDGSFRCLGSPQHI-KNRFGDGYTVKVWLH 4938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43672NP_788912.3 rim_protein <266..>732 CDD:130324 115/515 (22%)
ABC_subfamily_A 519..737 CDD:213230 59/219 (27%)
P-loop_NTPase 1330..1517 CDD:422963 49/190 (26%)
Abca13XP_038948786.1 rim_protein 1..>82 CDD:130324
rim_protein 3042..5029 CDD:130324 373/1870 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342179
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

Return to query results.
Submit another query.