DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43672 and Abca8a

DIOPT Version :9

Sequence 1:NP_788912.3 Gene:CG43672 / 318910 FlyBaseID:FBgn0263747 Length:1690 Species:Drosophila melanogaster
Sequence 2:XP_006533124.3 Gene:Abca8a / 217258 MGIID:2386846 Length:1653 Species:Mus musculus


Alignment Length:1840 Identity:361/1840 - (19%)
Similarity:705/1840 - (38%) Gaps:413/1840 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ICHVFCLLVWKNFQKQKHNK----------LVLILSLVLPVMSSLFLLFIRSSSDSNMRDYSIRA 59
            :|.....|:.||..::|..|          .:::|||:      |||..      ..:.|:|...
Mouse    42 VCQQTWALLCKNLLRKKRLKRDTFLEFLYTALILLSLI------LFLQL------HEVYDFSSLP 94

  Fly    60 EAELLEFSWSSLIGKIQERRAKMASKQRNFTTNVFIPDIRVAFAPNSNAALRRLMGDALGKLS-M 123
            :.:|         |:|.           :|..:.|:    :.:.| .....:|:| |.:..:| |
Mouse    95 DVDL---------GRID-----------SFNDSTFM----IVYTP-ITPTTQRIM-DRVSLVSYM 133

  Fly   124 SEDKIV---DFENCNDMRIHAASEHYLASVCFRNVDESLN-------GLPTVLNFAIIMPSELRN 178
            :..||:   :.||..::.....|:  :..|.|.|. .|.|       .:||:           :.
Mouse   134 TGRKILASPNEENMTELISMRFSD--VVGVIFTNA-YSYNLKFIKGARIPTI-----------KE 184

  Fly   179 YEDTWIGDSWKETTTLMDRDVAEEDEFDE---DGYTDYMGEGFVPLQYHISMQFLRATA--SKVE 238
            ::|                ..|....:.|   .|.:::..:|||.||..|:...:..|.  |.:|
Mouse   185 HQD----------------HTAHCHSYGEIIYCGLSEFWRDGFVALQAAINAAIIEVTTNHSVME 233

  Fly   239 KLPKVVMRRFNENPNVLLSEGIGTSVVLLILLGFMFPVTILTTLIVEERELGQRYMLKILNASAT 303
            ::..:. .::.:..:.:..||..|...|...:....|:|...:..|.......:.::.::....:
Mouse   234 EMMSLT-GKYIKIDSFVGQEGTTTDCFLFFCIIRFSPLTYYISAGVTRERKKMKGLMAVMGLRDS 297

  Fly   304 LQMAAW--FFNVFTHFLITSLLITILLKIEWNGATAAVNKCPWPILLCFLISYGCSVTSLIILMT 366
            ....:|  .:.|.. |::|.|..||:..:::...|.      :.::......||.|:.||..||:
Mouse   298 AFWLSWGLLYGVIV-FVVTLLSTTIVKLVQFVFLTG------FMVIFSLFFFYGLSLISLSFLMS 355

  Fly   367 SAMRRSRVAMVMAPIIWILLALPLLSKKELLSDGPDVFYGFATV-------LLCNVSFSRGLSKI 424
            ..:::|    .:..::..||.:...|.      |....|.:..|       ||...:|..|:.::
Mouse   356 VLLKKS----FLTDLVVFLLTVSCGSL------GFTALYRYLPVSLEWLLSLLSPFAFMLGMVQL 410

  Fly   425 FYIEDYTL----------GVTIGK--YMFYRVSKSDFGIFVPIVCFYVQTIFCTLLAM----IFE 473
            ..: ||.:          ...||.  .:|:.      |:|..::.||.:.:..:....    :|.
Mouse   411 LRL-DYDVNSNADPMGNPNEVIGTIFMLFFD------GVFYLLLTFYFEKVLPSEYGRRHPPLFF 468

  Fly   474 NNAYFWLAIRVKNLLKKYHATRSAV-GRLKRQIPEVSFSKTSAE----ALIEFRGVWQKY---SN 530
            ..:.||..        :..|.|:|: .....:..:.||...|.|    ..|..|.:.:.|   |.
Mouse   469 LKSSFWSG--------QNPANRTALDNETDYEFSDDSFEPVSMEFHGKEAIRIRNLTKDYIQKSK 525

  Fly   531 STYVVQDITLNVYAGEVVALLGHNASGKSTIIKMLYGRTRPKLG--EIYLSGFNIVTQRKEALKN 593
            .|..::|:||:||.|::.|:|||:.:||||::.:|.|...|..|  .|:.:..:.:|..:...|.
Mouse   526 RTEALKDLTLDVYKGQITAILGHSGAGKSTLLNVLSGLCVPTKGWVTIHNNKLSEMTDLENISKL 590

  Fly   594 SSISMSYKTLFTELVVLDHLVFLSRLRGLSKTEAKLEAKALLRYLKLEDWEKTLVNDLTIGQRRV 658
            :.:.......|..|.|.::|...::::|:...|...|.:.:|..|.:::.:..||.:|:.||:|.
Mouse   591 TGVCPQCNVQFDFLTVRENLRLFAKIKGIQAHEVDNEVQRVLLELDMKNTQNILVQNLSGGQKRK 655

  Fly   659 LQFLCAFAGGNQIVILDKPFDGIDEQRTSLFYSLILDQKKNRSIFFTSNNQKVASGIADRIFVLS 723
            |.|..|..|..||.:||:|..|:|.......::.:.:::.:|.:.|::.....|..:|||...:|
Mouse   656 LTFGIAILGDPQIFLLDEPTAGLDPFSRHRVWNFLKERRADRVVLFSTQFMDEADILADRKVFIS 720

  Fly   724 KGKLQAFGTVKKLCRMLNESYRLIIFGNEKCSFKDVYAFMATFIPEIEMDSILADCASFLVKHKY 788
            ||||:..|:...|.:.....|.|.:..:|.|..:.:.:.:...||:.::.:......|:::..:.
Mouse   721 KGKLKCAGSSLFLKKKWGIGYHLSLQLSETCVHERITSLVKQHIPDSKLSAESEGKLSYILPLER 785

  Fly   789 HTELINLIENLARLKNDLNVYSFEIHECSIDDILASLYTRDKSTLEFGQPGL-QTLLASRQQSAK 852
            ..:..:|..:|.| ..||.:.::.:...::.::...|  ..||:::....|: :.:.|...:|.:
Mouse   786 TNKFPDLYRDLER-SPDLGIENYGVSITTLTEVFLKL--EGKSSIDQSDIGMTEDVQAGGARSPE 847

  Fly   853 RRFIIPTMYLLEELR-----------QLLIADTRNWFLPILKLTLPSLVVV-------------- 892
            |...:..:..|...|           |.|.|.||..||. ||....|:|::              
Mouse   848 RFAEVEQLVSLLNGRCKMKGGMALWWQQLCAVTRLRFLK-LKHERKSIVILILVLGIGLLHILSA 911

  Fly   893 ------------WTLSMP--YFWHNCRQPGHITFPMSDHGDGIILMQKDTLDSELLVASEMYAKV 943
                        |.|: |  ||....:||..   |:::                ||:.::..|| 
Mouse   912 NIYRMVRQSDYCWELA-PHMYFLTPGQQPQP---PLTN----------------LLIVNKTGAK- 955

  Fly   944 GVTEVDKTVDITTFIYNYEYKNSLL-----------SDADIMEAVIFS----NVQIEVLFNTKWP 993
                      |..||::.|.:|..|           .|:....|:|.|    |....:..|||..
Mouse   956 ----------IDDFIHSLEQQNIALEVDAFGTRNGTEDSQYNGAIILSGDEKNYNFTLACNTKRL 1010

  Fly   994 HTAPDSLAQALNSLAVAFIDGDAGIKVELEVLPFSTIHTLQLHLNIDGYDLIFASCLSFCFCFIW 1058
            :..|..:....|.|...|.. .|.|:.:....|....|.        .:|.:       .:.|:|
Mouse  1011 NCFPVLVDIVSNGLLGLFAP-SAHIQTDRSTFPEENDHR--------KFDYL-------AYFFLW 1059

  Fly  1059 SI------PLLHMTLSRD--GRYNYVELIAGMPTIVLIVAFLIYELLVVLLALFPINIAVIFFHW 1115
            .:      |.:.||...|  .|..:...|:|:..........::|:.|....:..|.||   |:.
Mouse  1060 VLLMACVPPYISMTSIDDYKNRAQFQLWISGLSPSAYWFGQALFEVPVYCALILSIFIA---FYA 1121

  Fly  1116 DLLMDSNIHIYSVYVMFIIAACVFSLNILITIMPISDMPFVYLKVLLAYSLGILVYIAVKELRPF 1180
            ....:|...:..:::. |:....::::::.....||   |:|.|......|..|.:..|...   
Mouse  1122 SAPPESKFTVGDLFIQ-ILYVGGYAMSVIFMTYVIS---FIYRKGRKNSGLWSLCFYIVSFF--- 1179

  Fly  1181 TNPNTAHFLLLDFHPFYAL--LHNLMRIASISEKIWLCSDRQIYETSVYADQCNTIPNCCDDDAQ 1243
                :..|:|:|:....:|  |..|:..|::.....|..:.:.:...::            :..:
Mouse  1180 ----SMCFMLIDYFRDISLFVLIALVPPATLGGCTLLHFENREFSEIIF------------EPER 1228

  Fly  1244 EFYHLRYLCCVYLLLVVVWISIFIFLKSHMVKR--------------RPRQPKYFWD-SDPDSKY 1293
            |:.:|      :.|..::..:||:.:...|.::              .||..:.|.: .|||.: 
Mouse  1229 EYSYL------FFLAPLLHFAIFVVILRCMERKFGMKTMRTDPVFRISPRSDRVFNNPEDPDGE- 1286

  Fly  1294 DQNIL--HIMEPSELENTWIHEKSRV--STLERNH--------IESKALHVEHLSVFFGLKAAIK 1346
            |:::.  .:...:.|.:....||..:  |.|.:.:        ::||.            |.|.:
Mouse  1287 DEDVSQERVWTANALTSADFQEKPAIIASCLRKEYKGKKKCFVLKSKK------------KIATR 1339

  Fly  1347 HIDFMVNRYQVMSVFGANGTGKSVLLKTILGIYTPSSGRIISSKTVPFKSKDLDSCHMVGYSAQE 1411
            :|.|.|.:.:|:.:.|.||.|||..:|.|.|...||:|:::..     .|...|:...:||..||
Mouse  1340 NISFCVRKGEVVGLLGHNGAGKSTSIKMITGETKPSAGQVLLK-----GSSTGDTPGFLGYCPQE 1399

  Fly  1412 FQTMQLMTILETWDLILRIRRSKQISFRAEATKLCKIFGLYKYRFNSLSICSQGVLKRLSLGIAL 1476
            ......:|:.|..::...|:..::........:|.....|.....:.:...|:||.::|...:::
Mouse  1400 NALWLNLTVREHLEIFAAIKGMRKSDANVAIERLADALKLQDQLKSPVKTLSEGVKRKLCFVLSI 1464

  Fly  1477 MSDAELILLDDPFTHLDIVSQRSMLHIIH---DLRRRGHSIIYTCSDTAYSTPAL----RMATLS 1534
            :.:..::|||:|.|.:|...|:.|...|.   ....||..:     .|.|...|.    |:|.:.
Mouse  1465 LGNPSVVLLDEPSTGMDPEGQQQMWQAIQATFSNTERGALL-----TTHYMAEAEAVCDRVAIMV 1524

  Fly  1535 YPGIAVIGEREEMQQNYYSSYYMVETRIHLAELGSPIDFDSQSTEAKEDRAGTTGTLLRHKHQEF 1599
            ...:..||..:.::.. :...|::|.::.......|:                        :.|.
Mouse  1525 SGRLRCIGSIQHLKSK-FGKEYLLEMKVKTPSQVEPL------------------------NTEI 1564

  Fly  1600 SAAFTDSADRWKYLKLCGVIENVFPHAIIKNVSFPRVCFWLSSHMYPMSRIVDTLHRNKQ--DFY 1662
            ...|..:|.:.:|..|.     |:        ..||      ..:.|:|:....|...||  |..
Mouse  1565 MRLFPQAARQERYSSLM-----VY--------KLPR------EDVQPLSQAFFKLETVKQSFDLE 1610

  Fly  1663 SFSVSQPSVNSVFLSIHRQK 1682
            .:|:||.::..|||.:.:::
Mouse  1611 EYSLSQSTLEQVFLELSKEQ 1630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43672NP_788912.3 rim_protein <266..>732 CDD:130324 112/500 (22%)
ABC_subfamily_A 519..737 CDD:213230 64/222 (29%)
P-loop_NTPase 1330..1517 CDD:422963 44/189 (23%)
Abca8aXP_006533124.3 rim_protein <258..1630 CDD:130324 308/1553 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838383
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.850

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