DRSC/TRiP Functional Genomics Resources

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Protein Alignment p24-2 and Tmed10

DIOPT Version :10

Sequence 1:NP_788617.1 Gene:p24-2 / 318890 FlyBaseID:FBgn0053105 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_081051.1 Gene:Tmed10 / 68581 MGIID:1915831 Length:219 Species:Mus musculus


Alignment Length:199 Identity:63/199 - (31%)
Similarity:105/199 - (52%) Gaps:9/199 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LALILCVLHSACGLYFHISQTERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGIGMHVEV 72
            |.|:|....|..|:.||:....|||..||:..:..|...|::   ..:|.|    :.|:..|:::
Mouse    19 LFLLLLGPSSVLGISFHLPVNSRKCLREEIHKDLLVTGAYEI---TDQSGG----AGGLRTHLKI 76

  Fly    73 RDSDDKIVLSRVYSSQGRISFTSHTPGEHVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVA 137
            .||...|:.::..:::|:.:||:.......:|..|..|..... || |.||::.|..|.:|..:|
Mouse    77 TDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPD-QL-VILDMKHGVEAKNYEEIA 139

  Fly   138 QKEKLTELQLRIRQLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGFWH 202
            :.|||..|::.:|:|.|..|.|..:..|.:.|||..|.|:||||:|||::|:.....|:.:..|.
Mouse   140 KVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQ 204

  Fly   203 LFNL 206
            :|.|
Mouse   205 VFYL 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-2NP_788617.1 EMP24_GP25L 20..206 CDD:426051 58/185 (31%)
Tmed10NP_081051.1 Required for interaction with STX17. /evidence=ECO:0000250 1..142 36/131 (27%)
EMP24_GP25L 31..213 CDD:426051 59/187 (32%)
Required for TMED10 and TMED2 cis-Golgi network localization. /evidence=ECO:0000250 147..178 11/30 (37%)
Interaction with COPG1. /evidence=ECO:0000250 204..219 2/5 (40%)
Interaction with ARF1 and IL1B. /evidence=ECO:0000250|UniProtKB:P49755 207..219 1/2 (50%)
COPI vesicle coat-binding. /evidence=ECO:0000255 211..219
COPII vesicle coat-binding. /evidence=ECO:0000255 211..212
Blue background indicates that the domain is not in the aligned region.

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