DRSC/TRiP Functional Genomics Resources

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Protein Alignment p24-2 and tmed-4

DIOPT Version :9

Sequence 1:NP_001189205.1 Gene:p24-2 / 318890 FlyBaseID:FBgn0053105 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_507861.1 Gene:tmed-4 / 180307 WormBaseID:WBGene00013360 Length:211 Species:Caenorhabditis elegans


Alignment Length:199 Identity:135/199 - (67%)
Similarity:166/199 - (83%) Gaps:1/199 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LALILCVLHSACGLYFHISQTERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGIGMHVEV 72
            |..:|.:...|..|||||::||:||||||:||||.|..||||:||||.:.|: ...|.|||||||
 Worm     4 LIALLSLATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGY-GDYPNIGMHVEV 67

  Fly    73 RDSDDKIVLSRVYSSQGRISFTSHTPGEHVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVA 137
            :|.:||::||::|:::||.:|||:||||||||::|||||||:|||||||||||.|:||.|||.:|
 Worm    68 KDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAGDHAQDYAQIA 132

  Fly   138 QKEKLTELQLRIRQLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGFWH 202
            ||:||.|||||||||||||:|||||||||||||||||.|||||||||.:||:||.|||...|.|.
 Worm   133 QKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQ 197

  Fly   203 LFNL 206
            :.:|
 Worm   198 MRHL 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-2NP_001189205.1 EMP24_GP25L 20..206 CDD:279450 131/185 (71%)
tmed-4NP_507861.1 EMP24_GP25L 16..206 CDD:366467 132/187 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 301 1.000 Domainoid score I766
eggNOG 1 0.900 - - E1_KOG1690
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5308
Inparanoid 1 1.050 311 1.000 Inparanoid score I1549
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53581
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001070
OrthoInspector 1 1.000 - - otm14332
orthoMCL 1 0.900 - - OOG6_102210
Panther 1 1.100 - - O PTHR22811
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X178
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.830

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