DRSC/TRiP Functional Genomics Resources

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Protein Alignment His1:CG31617 and hp1bp3

DIOPT Version :9

Sequence 1:NP_724341.1 Gene:His1:CG31617 / 318854 FlyBaseID:FBgn0051617 Length:256 Species:Drosophila melanogaster
Sequence 2:XP_005169466.2 Gene:hp1bp3 / 558102 ZFINID:ZDB-GENE-060810-79 Length:595 Species:Danio rerio


Alignment Length:345 Identity:85/345 - (24%)
Similarity:127/345 - (36%) Gaps:117/345 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VEKKVV-QKKASGSAGT----KAKKASATPSHPPTQQMVDASIKNLKERGGSSLLAIKKYITATY 79
            |||.|| |.|..|.:|:    |...|||.|.. ...:.:...|..|.|...:|.:.||||:...:
Zfish   240 VEKGVVRQLKGKGFSGSFTIGKKPAASALPKE-TLGESLPLIITRLCEPKEASYILIKKYLEQHF 303

  Fly    80 -KCDAQKLAPFIKKYLKSAVVNGKLIQTKGKGASGSFKLSASAKK------------------EK 125
             :.:.:.....:|..|:.:|..|.|.|..||||||:|:|..:..|                  ..
Zfish   304 PQLNVENRPDILKNCLQRSVEKGYLEQITGKGASGTFQLKKAGNKVLMGGGLLEDAVVAAITAMN 368

  Fly   126 DPKA------------------------------KSKVL-------------------------- 134
            :||.                              |.||:                          
Zfish   369 EPKTCSITILRKFLMQRKEKNAFPVVSHLKRTLQKCKVMGWMEQISGHGLSGSYQLSYPFYPSPA 433

  Fly   135 ----SAEKKVQSKKVASKKIGVS------SKKTAVGAADKK---PKAKKAVATKKTA----ENKK 182
                ...:|::.|:|..|::.||      |::.:...:|::   ||.:...|.::.|    :||:
Zfish   434 VLFPEMVEKLKEKEVKRKRVEVSDESEEESEEESEEESDEEEPPPKKRNQRANQRPAPKARQNKR 498

  Fly   183 TEKAKAKDAKKTGIIKSKPAATKAKVTAAKPKAVVAKASKAKP-----------AVSAKPKKTVK 236
            .:....|.|.|      |||..||...|.||.|....|||..|           |.::|||..:.
Zfish   499 AKPVSRKPAPK------KPAPRKAPPPAKKPAAASKAASKKAPEPVKATPVKKAAPTSKPKTPIA 557

  Fly   237 KASVSATAKKPKAKTTAAKK 256
            |...|..:|:|..|  ||||
Zfish   558 KKMTSRGSKRPSPK--AAKK 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
His1:CG31617NP_724341.1 Linker_histone 46..118 CDD:278939 21/72 (29%)
hp1bp3XP_005169466.2 LGT <57..137 CDD:320995
Linker_histone 186..260 CDD:306920 9/19 (47%)
Linker_histone 281..342 CDD:306920 21/60 (35%)
Linker_histone 357..425 CDD:306920 5/67 (7%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4012
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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