DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lz and runx2b

DIOPT Version :9

Sequence 1:NP_511099.2 Gene:lz / 31883 FlyBaseID:FBgn0002576 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_998027.2 Gene:runx2b / 405788 ZFINID:ZDB-GENE-040629-4 Length:464 Species:Danio rerio


Alignment Length:610 Identity:184/610 - (30%)
Similarity:228/610 - (37%) Gaps:225/610 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 NSNNNNAVHQDLLWMERLVQKRQQE----------HPGELVRTSNPYFLCSALPAHWRSNKTLPM 312
            |||......||...:.||   |.||          ||.|||||.:|.||||.||:|||.|||||:
Zfish    39 NSNAGPQQQQDGAVVPRL---RAQENRSMAEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPV 100

  Fly   313 AFKVVALAEVGDGTYVTIRAGNDENCCAELRNFTTQMKNDVAKFNDLRFVGRSGRGKSFTLTITV 377
            |||||||.||.|||.||:.||||||..|||||.:..|||.||:||||||||||||||||||||||
Zfish   101 AFKVVALGEVPDGTVVTVMAGNDENYSAELRNASGVMKNQVARFNDLRFVGRSGRGKSFTLTITV 165

  Fly   378 ATSPPQVATYAKAIKVTVDGPREPRSKTSPTGGPHYRALGLGQRPYIDGFPS----TKALHELES 438
            .|:|||||||.:|||||||||||||.                .||.:|..|.    :..|.|||.
Zfish   166 FTNPPQVATYHRAIKVTVDGPREPRR----------------HRPKLDDSPKAGLFSDRLSELER 214

  Fly   439 LRRSAKVAAVTTAAAAAATAASAANAVAAAAAAVAVTPTGGGGGVAAGGVAGGAGAGLVQQLSSN 503
            :|::.....|.|.                       ||                        ..:
Zfish   215 IRQTTMRVTVPTQ-----------------------TP------------------------RPS 232

  Fly   504 YSSPNS-TINSDCQVYKPNAPHIQAAEMMGAGEWTNGSSSSAAAYYHSHAHHPHAHHAHAHLQHQ 567
            .||||| |.....|:..|.       :...:..|   |.......|.|....|.. |:...|...
Zfish   233 LSSPNSYTPQGQTQITDPR-------QAQSSPPW---SYDQTYPSYLSPMASPSV-HSTTPLSSS 286

  Fly   568 MA--LPPPPPPPAAAPVSVGVGGNGATMGMGMGVGVGMGMNHYGGGYD----SANSLEAGQYAA- 625
            .|  ||.....|...|        |:|           .::.:.|.::    :.:||...:::: 
Zfish   287 RATGLPSISDVPRRLP--------GST-----------DLSPFPGQFERQFPAFSSLTESRFSSP 332

  Fly   626 --HLPAV-------------LPEMHGHGFATDPYQTAGYGGGNTGGG---SASKSELDYGGSYNQ 672
              |.||.             |...|.|.:...||.    |...:..|   |:|...|.||.|   
Zfish   333 RMHYPATFTYTPTPVTTGMSLGSAHYHTYLPPPYP----GSTQSQSGPFQSSSTPYLYYGAS--- 390

  Fly   673 AWSNGYQNYQYGSCLATAQYGPQAAPPPQPPPPPPVVLCPQLYSTVNQNQIHLHLHSSEKLEQYL 737
              |..||        .:...|.:.:|....||                                 
Zfish   391 --SGSYQ--------FSMVPGGERSPTRMMPP--------------------------------- 412

  Fly   738 GTATSADHLTIGSLTGSSRSSIEIGQDQYHQQVHHAQQQQQQQQQQQQVHHPQQQQVESAGEVGG 802
              .|||.       ||:|                             .|:.....|.:.:|.|.|
Zfish   413 --CTSAS-------TGTS-----------------------------LVNPNLPVQADGSGGVEG 439

  Fly   803 SGAGGVESAREEDVGDLSQ-VWRPY 826
            .|:...........|.:.: |||||
Zfish   440 DGSHSNSPTLLNPAGRMDEGVWRPY 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lzNP_511099.2 Runt 283..404 CDD:279225 95/120 (79%)
runx2bNP_998027.2 Runt 71..192 CDD:279225 95/136 (70%)
RunxI 370..464 CDD:285676 30/177 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.010

Return to query results.
Submit another query.