DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lz and Runx2

DIOPT Version :9

Sequence 1:NP_511099.2 Gene:lz / 31883 FlyBaseID:FBgn0002576 Length:826 Species:Drosophila melanogaster
Sequence 2:XP_038939882.1 Gene:Runx2 / 367218 RGDID:2282 Length:652 Species:Rattus norvegicus


Alignment Length:414 Identity:144/414 - (34%)
Similarity:183/414 - (44%) Gaps:130/414 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   282 EHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRAGNDENCCAELRNFT 346
            :||.|||||.:|.||||.||:|||.|||||:|||||||.||.|||.||:.||||||..|||||.:
  Rat   220 DHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNAS 284

  Fly   347 TQMKNDVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIKVTVDGPREPR--------- 402
            ..|||.||:||||||||||||||||||||||.|:|||||||.:|||||||||||||         
  Rat   285 AVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDDS 349

  Fly   403 ------SKTSPTGGPHYRALGLGQRP-----------------------------------YIDG 426
                  .:.|..|...:.::.:|..|                                   |...
  Rat   350 KPSLFSDRLSDLGRIPHPSMRVGVPPQNPRPSLNSAPSPFNPQGQSQITDPRQTQSSPPWSYDQS 414

  Fly   427 FPS------TKALHE---LESLR------------------------RSAKVAAVTTAAAAAATA 458
            :||      :.::|.   |.|.|                        :|:....:::.....:||
  Rat   415 YPSYLSQMTSPSIHSTTPLSSTRGTGLPAITDVPRRISDSEPSTLDSQSSTTLFLSSEEPGPSTA 479

  Fly   459 ASAANAVAAAAAAVAVTPTGGGGGVAAGGVAGGAGAGLVQQLSSNY----SSPNSTINSDCQVYK 519
            |..:.:.:......:.:||.....:....:|..|.|..|.:.:..|    |||.:          
  Rat   480 ALPSPSSSCEPQPFSPSPTMLPSLLQPLPIASTAPAPCVPRRTGLYTIVTSSPEA---------- 534

  Fly   520 PNAPHIQAAEMMGAGEWTNGSSSS-------------------AAAYYHSHAHHP-HAHHAHAHL 564
              |||:.        :|.....|:                   |.|....|..|| .|...||  
  Rat   535 --APHLV--------DWLPSCPSATSPGVRGKDRERPQTMLAPAPALERGHNQHPGPARDGHA-- 587

  Fly   565 QHQMALPPPPPPPAAAP-VSVGVG 587
            :|....|||..|||.|| :...||
  Rat   588 EHAGTSPPPCSPPATAPTLEANVG 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lzNP_511099.2 Runt 283..404 CDD:279225 95/135 (70%)
Runx2XP_038939882.1 Runt 217..343 CDD:395684 95/122 (78%)
PHA03247 <319..606 CDD:223021 67/308 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3982
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.770

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