DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and Ltbp3

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_038948570.1 Gene:Ltbp3 / 83838 RGDID:62057 Length:1317 Species:Rattus norvegicus


Alignment Length:1035 Identity:291/1035 - (28%)
Similarity:382/1035 - (36%) Gaps:347/1035 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 TNDCDKDGTKCTHGACLNG----VCHCNDGYGG----CNCVDKDENECKQRPCDV-FAHCTNTLG 149
            |::|..:...|.||.|:.|    .||||.||..    ..||  |.|||:..||.. ...|.||.|
  Rat   572 TDECRLNQNICGHGQCVPGPSDYSCHCNPGYRSHPQHRYCV--DVNECEAEPCGPGRGICMNTGG 634

  Fly   150 SFTCTCFPGYR----GNGFHCEDIDECQDPAIAARCVENAECCNLPAHFLCKCKDGY--EGDGEV 208
            |:.|.|..|||    ..|..|.|::||..|.:   |.:...|.|.|.|:.|.|..||  :.....
  Rat   635 SYNCHCNRGYRLHVGAGGRSCVDLNECAKPHL---CGDGGFCINFPGHYKCNCYPGYRLKTSRPP 696

  Fly   209 LCTDVDECRNPENCGPNALCTNTPGNYTC-SCPDGYVGNNPYREGCQDVDECSYPNVCGPGAICT 272
            :|.|:||||:|..| |:..|.|.||::.| :|..||  .:.....|:|::|||..:.|.|| .|.
  Rat   697 VCEDIDECRDPSTC-PDGKCENKPGSFKCIACQPGY--RSQGGGACRDINECSEGSPCSPG-WCE 757

  Fly   273 NLEGSYRCDCPPGYDGDGRSESGCVDQDECARTPCGRNADCLNTDGSFRCLCP--DGYSGDPMNG 335
            ||.|||||.|..||:                                     |  ||.|      
  Rat   758 NLPGSYRCTCAQGYE-------------------------------------PALDGLS------ 779

  Fly   336 CEDVDECATNNPCGLGAECVNLGGSFQCRCPSGFVLEHD-PHADQLPQPLNTQQLGYGPGATDIA 399
            |.|:|||.|.|.|..|. |.|..|||||:|.||:.|..| .|                       
  Rat   780 CIDMDECETGNICHDGI-CTNTPGSFQCQCLSGYHLSRDRSH----------------------- 820

  Fly   400 PYQRTSGAGLACLDIDECNQPDGVAKCGTNAKCINFPGSYRCLCPSGFQGQGYLHCENINECQDN 464
                       |.|||||:.|   |.| ....|||..||||||||.|.:                
  Rat   821 -----------CEDIDECDFP---AAC-IGGDCINTNGSYRCLCPQGHR---------------- 854

  Fly   465 PCGENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCENTVPGYNCKCPQGY 529
                      .||.              |.|.|||||:.....|..|..|||....|.|.|.:|:
  Rat   855 ----------LVGG--------------RKCQDIDECSQDPGLCLPHGACENLQGSYVCVCDEGF 895

  Fly   530 DGKPDPKVACEQVDV---NILCSSNFDCTNNAECIENQCFCLDGFEPIGSSCVDIDECRTHAEVC 591
            ....| :..||:|:.   ...|..|||.|         .||    :.:.::.|...||       
  Rat   896 TLTQD-QHGCEEVEQPHHKKECYLNFDDT---------VFC----DSVLATNVTQQEC------- 939

  Fly   592 GPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGAHAYCKPDQNEAYCVCED--GWTYN 654
                 |.:....:|..||.            .||.       .|   ...|.:.:|.|  |:|.:
  Rat   940 -----CCSLGAGWGDHCEI------------YPCP-------VY---SSAEFHSLCPDGKGYTQD 977

  Fly   655 PSDVAAGCV---DIDECDVMHGPFGS--CGQNATCTNSAGGFTCACPPGFSGDPH-SKCVDVDEC 713
            .:.|..|..   |||||.:    ||:  | :...|.|:..|:.|.|..||..|.: .:|||||||
  Rat   978 NNIVNYGIPAHRDIDECIL----FGAEIC-KEGKCVNTQPGYECYCKQGFYYDGNLLECVDVDEC 1037

  Fly   714 RTGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSVRCVPIVSCSANEDCPGNSICDATKRCLC 778
             ...|.|..|. |.|. .|||.|.|                         .|......|.::||.
  Rat  1038 -LDESNCRNGV-CENT-RGGYRCAC-------------------------TPPAEYSPAQRQCLS 1074

  Fly   779 PEPNIGNDCRHPCEALNCGAHAQCMLANGQAQCLCAPGYTGNSALAGGCNDIDECRANPCAEKAI 843
            || .:|.     ...::.|:.||..:                        |:|||:.........
  Rat  1075 PE-EMGE-----ARGISAGSRAQEEM------------------------DMDECQDPAACRPGR 1109

  Fly   844 CSNTAGGYLCQC-----PGGSSGDPYREGCITSKTVGCSDANPCATGETCVQDSYTGNSVCICRQ 903
            |.|..|.|.|:|     ||.|..|                   |...|:..:.......||..::
  Rat  1110 CVNLPGSYRCECHPPWVPGSSGRD-------------------CQLPESQAEHGPERREVCWGQR 1155

  Fly   904 GYERNSENGQCQ--------DVDECSVQRGKPACGLNALCKNLPGSYECRCPQGHNGNPFIMCEI 960
            |     |:|.|.        ..|:|..::|:   |....|:..|       |:|....       
  Rat  1156 G-----EDGMCMGPLAGPALTFDDCCCRQGR---GWGTQCRPCP-------PRGTGSQ------- 1198

  Fly   961 CNTPECQCQSPYK----LVGNSCVLSGCSSGQ-----ACPSGAECISIAGGVSYCACPKGYQTQP 1016
            |.|.:.:..|.:.    |:|.|..:...||.:     .|.|| .|:...|| :.|.||.|:|.  
  Rat  1199 CPTSQSESNSFWDTSPLLLGKSPRVDEDSSEEDSDECRCVSG-RCVPRPGG-AVCECPGGFQL-- 1259

  Fly  1017 DGS---CVDVDECEE---RGAQLCAFGAQCVNKPGSYSCHCPEGYQGDAYNGLCALAQRK 1070
            |.|   |||:|||.|   ||. ||. ..:|||..||:.|.|..|:.....:|.|...:|:
  Rat  1260 DASRARCVDIDECRELNQRGL-LCK-SERCVNTSGSFRCVCKAGFTRSRPHGACVPQRRR 1317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 13/33 (39%)
EGF_CA 212..247 CDD:238011 16/35 (46%)
EGF_CA 255..>286 CDD:214542 16/30 (53%)
EGF_CA 298..331 CDD:238011 4/34 (12%)
EGF_CA 338..373 CDD:238011 19/34 (56%)
EGF_CA 413..456 CDD:238011 20/42 (48%)
EGF_CA 457..490 CDD:238011 2/32 (6%)
EGF_CA 497..>529 CDD:214542 13/31 (42%)
EGF_CA 580..>612 CDD:214542 6/31 (19%)
EGF_3 676..702 CDD:289699 9/27 (33%)
EGF_CA 1022..1056 CDD:214542 17/36 (47%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
Ltbp3XP_038948570.1 EGF_CA 352..387 CDD:214542
TB 412..453 CDD:395554
PHA03247 <484..574 CDD:223021 1/1 (100%)
EGF_CA 613..656 CDD:214542 17/42 (40%)
EGF_CA 657..692 CDD:238011 13/37 (35%)
EGF_CA 700..733 CDD:214542 16/35 (46%)
EGF_CA 741..781 CDD:214542 22/83 (27%)
EGF_CA 782..822 CDD:214542 21/74 (28%)
EGF_CA 823..862 CDD:214542 23/82 (28%)
EGF_CA 863..896 CDD:214542 14/32 (44%)
TB 926..969 CDD:395554 12/80 (15%)
EGF_CA 1033..>1061 CDD:214542 15/55 (27%)
EGF_CA 1095..1135 CDD:214542 14/58 (24%)
TB 1161..>1195 CDD:395554 8/43 (19%)
EGF_CA 1268..1306 CDD:214542 17/39 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I11622
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45515
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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