DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and specc1l

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_012819429.1 Gene:specc1l / 733457 XenbaseID:XB-GENE-5937736 Length:1105 Species:Xenopus tropicalis


Alignment Length:1112 Identity:198/1112 - (17%)
Similarity:352/1112 - (31%) Gaps:315/1112 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  4449 RSADRTTPSESPETPTTLPSDFITRPHSEKTTESTRDVPTTRPFEASTPSSASLETTVPSVTLET 4513
            |.|.|:. ..:|:.|....|....|..||.:..:...|  :||  .|:.|.|           ::
 Frog     2 RKASRSV-GAAPKVPANNKSQATERSKSESSAPTASKV--SRP--GSSLSKA-----------KS 50

  Fly  4514 TTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSADRTTLSESPETPTTLPSDFTIRPHS 4578
            ..::..|..||                       ||:.:    ::.....:.|:.|:..|.....
 Frog    51 NDDLLAGMAGG-----------------------LPASN----SVKVKKNSTTSYPNSGTAMSGQ 88

  Fly  4579 EQTTEST--RDVPTTRPFEASTPSPASLETTVPSVTSETTTNVPIGSTGGQVTGQTTAPPSEFR- 4640
            |..|.|:  ....|.|...:......|....:...:..|....|.|.  |..||:.:||....| 
 Frog    89 EGRTRSSAGSSSNTKRSGSSGAKEVGSSRERLRERSRLTANKKPQGL--GVGTGEVSAPSKRSRG 151

  Fly  4641 ----TTIRVEESTLPSRSTDRT----------TPSESPETPTIL----PSDSTTRTYSDQTTEST 4687
                ..||:.:|...::.:||.          ..:::.:...:|    ..|:.::...|.:.:|.
 Frog   152 RTDSDMIRMSKSKSDNQISDRAALEAKVKELMNLAKNKDAEILLLRTELRDTRSQLGQDVSDKSP 216

  Fly  4688 RDVPTTRPFEASTPSPASLETT------------------------------VPSVTLETTTNVP 4722
            .|:|.....|.:|.....|:..                              ..|:.:...::..
 Frog   217 DDLPLIHLQEQNTTVCEELQQLKSENRMLKDRLNALGFSLGQQPDDPDKLYGFQSLGINPGSHSD 281

  Fly  4723 IGSTGGQVTEQTT-SSPSEVRTTIRVEESTLP----SRSADRTTPSESPET--PTTLPSDFITRP 4780
            .|  ||.:|.... |:|..:...:..:||||.    |.|.| ...||..|.  |.|...|.:..|
 Frog   282 CG--GGTLTSSVEGSAPGSMEDLLSQDESTLTGERRSSSMD-NLDSECSEVYQPLTSSDDALDAP 343

  Fly  4781 HSEKTTESTRDVPTTRPFEASTPSSASLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVRT 4845
            .|...:|.   :|:|......:..:|| |.:|..:|...          .|:.|...|:..|::.
 Frog   344 SSSSESEG---LPSTERSRKGSSGNAS-EVSVACLTERI----------HQMEENQHSTAEELQA 394

  Fly  4846 TIRVEESTLPSRSADRTTPSESPETPTTLPSDFITRPHSEKTTESTRDVPTTRPFEASTPSSASL 4910
            |:: |.:.|...:.:..:.:|.......:..|.:.: .|:|....:|.:...:........:.||
 Frog   395 TLQ-ELADLQQITQELNSENERLGEEKVILMDSLCQ-QSDKLELFSRQLEYAQALLDEHHIAYSL 457

  Fly  4911 ETTVPS---VTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEES----------TLPSRS-- 4960
            :..:.|   :.|| ...:.:...|....||.......:..::::.|.          .|..|:  
 Frog   458 DEDLKSSRYLDLE-QRYMDLAENGRFEREQLLGVQQHLSNSLKMAEQDNKDAQDVIRALKERNHH 521

  Fly  4961 TDRTTPSE--SPETPTTLPSDFTTRPHSEQ---------------------TTESTRDVPTTRPF 5002
            .:|...:|  |.:.......::....:|||                     :..|:.|....:..
 Frog   522 MERIAEAEQLSKQALAATLEEYKATLNSEQGECARLKALLEQEKQRVAELYSIHSSGDASHIQNL 586

  Fly  5003 EASTPS----PASLETTVPSVTLETTTNV-PIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRS 5062
            ..|..|    ..||.:::....|...|:| .:....|::.::..:...|.:.  :|.|.||....
 Frog   587 LESVRSDKEKAESLASSLQEELLHARTDVNRMQDAFGKLEDEYRAFREEAQK--QVSELTLALEK 649

  Fly  5063 A------DRTTPSESPETPTTLPSDF-------------------ITRTYSDQTTESTRDVPTT- 5101
            .      ..|..|:..||...|..:.                   ..:...||..:..|::... 
 Frog   650 VRHELEEKETELSDMKETIFELEDEVEQHRAVKLHDNLIISDVENAVKKLQDQKHDMEREIKILN 714

  Fly  5102 ----------RPFEASTPSPASLETTVPSVTSETTTNVPIGSTGGQV-----TGQTTAPPSEFRT 5151
                      |.|:|...:...:...:.|...|     .||....|:     ..:..|...|..|
 Frog   715 RKLREESAEWRQFQADLQTAVVIANDIKSEAQE-----EIGELKRQLQEALEKNEKLAKEMENAT 774

  Fly  5152 TIRVEEST----------------------LPSRSTDRTTPSESPETPTTLPSDFTTRPHSDQTT 5194
            :.:.||..                      |..||   :|.|:...|..||...|.         
 Frog   775 SRKQEEERGRVYNYMNAVERDLAALRQGMGLNRRS---STSSDPAPTVKTLIKSFD--------- 827

  Fly  5195 ESTRDVPTTRPFEASTPSPASLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEE 5259
                        .||:.:|:      |:..:......||        .:|..|||.::|......
 Frog   828 ------------NASSQAPS------PAAAVAAAAATPI--------SRTPLSPSPMKTPPAAAV 866

  Fly  5260 STLPSRSAD------RTTPSESPETPTLPSDFTTRPHSEQTTESTRD------VPA---TRPFEA 5309
            |.:...|..      ::.|..|.:.|:. ::...:.|..:::.|:|.      |||   .:....
 Frog   867 SPMQRHSISGPISVAKSLPGLSEKRPSY-AEIPVQEHMLRSSSSSRSAASLPRVPAIDNAKSISV 930

  Fly  5310 STPSPASLETTVPSVTSEATTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSTDRTSPS 5374
            |..|...|:..:         :||.||          |:||     :.|..|..|..|...:||:
 Frog   931 SRRSSEELKRDI---------SVPDGS----------SAPS-----LMVMTSPSPQLSLSSSSPT 971

  Fly  5375 ESPETPT 5381
            .| .|||
 Frog   972 AS-VTPT 977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699
EGF_CA 212..247 CDD:238011
EGF_CA 255..>286 CDD:214542
EGF_CA 298..331 CDD:238011
EGF_CA 338..373 CDD:238011
EGF_CA 413..456 CDD:238011
EGF_CA 457..490 CDD:238011
EGF_CA 497..>529 CDD:214542
EGF_CA 580..>612 CDD:214542
EGF_3 676..702 CDD:289699
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395 45/249 (18%)
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572 22/124 (18%)
DUF4758 4581..4754 CDD:292572 39/228 (17%)
DUF4758 4683..4847 CDD:292572 40/200 (20%)
DUF4758 4785..4964 CDD:292572 31/193 (16%)
DUF4696 4841..5385 CDD:292395 113/662 (17%)
DUF4758 4887..5098 CDD:292572 41/278 (15%)
DUF4758 5193..5371 CDD:292572 36/192 (19%)
DUF4758 5294..5487 CDD:292572 25/97 (26%)
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
specc1lXP_012819429.1 Smc <358..789 CDD:224117 70/451 (16%)
CH 1003..1103 CDD:237981
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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