DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and Cdhr4

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:NP_001365320.1 Gene:Cdhr4 / 69398 MGIID:1916648 Length:783 Species:Mus musculus


Alignment Length:831 Identity:160/831 - (19%)
Similarity:245/831 - (29%) Gaps:307/831 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  3937 PATLTNNTDSNCTSTDITVGTTTQRIETTTDFINVK--------YTVM----------QLA-NQT 3982
            |.|:......||:|...|:...:  :...|.|.|..        |.||          .|| ||.
Mouse    33 PGTVLRPFSFNCSSYMPTLELLS--VRPPTSFFNKPSMHGDKGVYLVMVSLSSSARLDALAVNQY 95

  Fly  3983 EMRTR------------FTDIEAEN---ETTGPYTTTTESYKTTKQLSSNPETETPTTLPSRPTT 4032
            |::.:            |..::.:.   ..||.:.:....:...      |||.||..|      
Mouse    96 ELQLQYRCGNFVVDGSIFVHVQRDPGRIRCTGAFASPAGEFIYV------PETITPGAL------ 148

  Fly  4033 RPFTDQTTEFTSEIP-------TITPMEGSTPTPSHL-ETTVASITSESTTREVYTIKPFDRSTP 4089
                    .:|..:|       .||..:..:|.|..: |..:....|:....:..  |.|.... 
Mouse   149 --------VYTLLLPGVQRAQINITSAQNPSPGPFSIDEQGLLRAPSQGLRGQAQ--KTFQLQI- 202

  Fly  4090 TPVSPDTTVPSITFETTTNIPIGTTRGQVTEQTTSSPS------EKRTTIRVEESTLPSRSTDRT 4148
                      |::||...     :.||.:|.:...:||      :|..:|.:.|..:|.....|.
Mouse   203 ----------SVSFEKNQ-----SCRGMLTVKVLPAPSSQVSFLQKAQSITISEDLVPGSEVVRV 252

  Fly  4149 TPSE--------SPETPTILPS----DSTTRTYSDQTTESTRDVPTT----RPFEASTP------ 4191
            ..:.        ||. |::..|    |...||.:.......:....|    |.||...|      
Mouse   253 QATGFNLLYEIISPR-PSLFYSIGQADGVVRTTAPLDLARVQGAMVTKLQVRAFERPRPWASAVF 316

  Fly  4192 ----------------SPASLETTVPSVTLETTTNDPIGSTGGQVTEQTTSSPSEVRTTIGLEES 4240
                            .||.|.|.:|..:|..|..|.:          |...|.           
Mouse   317 DLTVSVRAVNQWPPRCHPALLVTQIPETSLVGTVLDAL----------TCVDPD----------- 360

  Fly  4241 TLPSRSTDRTTPSESPETPTTLPSDFITRPHSDQTTESTR------DVPTTRPFEASTPS----- 4294
                 |..|             |.|:..|.||...:.|.|      :|..|  .:..||.     
Mouse   361 -----SAGR-------------PLDYQLRFHSPPDSASLRLRDRILEVNAT--LDCDTPGACFQH 405

  Fly  4295 SASLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSR------SADRTT 4353
            |||: ..|.....:.||.:|:..   .||.....||:.|..|.||:|.|.|..      ..|...
Mouse   406 SASI-LVVDGGQPQMTTEIPVLV---MVTPVNEFSPACVPRTFRVQEDTGPHTLLGSIVGTDMDY 466

  Fly  4354 PSESPE-----TPTTL-------------PSDFTTR----------PHSEQ------------TT 4378
            |..|.|     .|:|.             |.|:..:          .||:.            .|
Mouse   467 PRNSLEYYISGGPSTFAVDRLSGELHLLGPLDYEQQRLYKITILLIDHSQDWDLNSHRSGSCTIT 531

  Fly  4379 ESTRDV--------PTTRPFEASTPSPASLETT-----VPSVTLETTTNVPIGSTGGQVTGQTTS 4430
            ....||        |..:.....||...|:|.|     :|......|.:.       .:.|..:.
Mouse   532 IEVEDVNDHAPECEPPFQELTIYTPMGHSMEVTKVSCWIPQEPQRLTLSY-------SIVGGNSQ 589

  Fly  4431 SPSEVRTTIRVEESTLPSRSADRTTPSESPETPTTL----------PSDFITRPHSEKTTESTRD 4485
            |...::..|.|...|:        .....||.|.|.          ||    .||...||..   
Mouse   590 SRFRLQGAILVYNDTV--------LGPPWPEQPCTYELLIHVADVGPS----IPHLSTTTTI--- 639

  Fly  4486 VPTTRPFEASTPSSASLETTVPS---------------------VTLETTTNVPIGSTGGQVTE- 4528
            :....|::|||.::::.::||.|                     |.|..|..|.:.:.|..::. 
Mouse   640 IVHLVPWKASTVATSTHQSTVSSTMTPLIVTELEAFWKPEPWFVVVLTATGAVLLLALGWLLSRI 704

  Fly  4529 --------QTTSSPSEVRTTIRVEESTLP---SRSADRTTLSESPETPTTL 4568
                    |..|.|::.:....::.:..|   ...|.|..:|:.|.|..:|
Mouse   705 LRGLAPSLQAPSKPAKAQLLNSIQGNEGPIERQMEAPRIEMSQVPRTAMSL 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699
EGF_CA 212..247 CDD:238011
EGF_CA 255..>286 CDD:214542
EGF_CA 298..331 CDD:238011
EGF_CA 338..373 CDD:238011
EGF_CA 413..456 CDD:238011
EGF_CA 457..490 CDD:238011
EGF_CA 497..>529 CDD:214542
EGF_CA 580..>612 CDD:214542
EGF_3 676..702 CDD:289699
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572 44/243 (18%)
DUF4696 4127..4678 CDD:292395 117/599 (20%)
DUF4758 4275..4448 CDD:292572 50/242 (21%)
DUF4758 4377..4574 CDD:292572 48/248 (19%)
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
Cdhr4NP_001365320.1 Cadherin_repeat 236..326 CDD:206637 16/90 (18%)
Cadherin_repeat 338..434 CDD:206637 29/140 (21%)
Cadherin_repeat 441..540 CDD:206637 19/98 (19%)
Cadherin_repeat 555..644 CDD:206637 22/110 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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