DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpy and Ltbp2

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_006240412.1 Gene:Ltbp2 / 59106 RGDID:68380 Length:1831 Species:Rattus norvegicus


Alignment Length:1229 Identity:348/1229 - (28%)
Similarity:469/1229 - (38%) Gaps:376/1229 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 GTQDCFLGADELSKELKCTNDCDKDGTKCTHGACL---NGV-CHCNDGY------GGCNCVDKDE 130
            |...||.||..:                |..|.|:   ||. |.|:.||      ..|.    |:
  Rat   854 GFDPCFAGASNI----------------CGPGTCVKLPNGYRCVCSPGYQLHPSQDYCT----DD 898

  Fly   131 NECKQRPCDVFAHCTNTLGSFTCTCFPGYR----GNGFHCEDIDECQDPAIAARCVENAECCNLP 191
            |||.:.||:....|.|::||::|.|:|||.    |:...|:|:|||:.|.:.:    ...|.|..
  Rat   899 NECLRNPCEGRGRCVNSVGSYSCLCYPGYTLATLGDTQECQDVDECEQPGVCS----GGRCSNTE 959

  Fly   192 AHFLCKCKDGYEGDGEVLCTDVDECRNPENCGPNALCTNTPGNYTC-SCPDGYVGNNPYREGCQD 255
            ..:.|:|..||.......|.|::|||:|..| |:..|.|:||:||| :|.:||:|.:   ..|.|
  Rat   960 GSYHCECDQGYVMVRRGHCQDINECRHPGTC-PDGRCVNSPGSYTCLACEEGYIGQS---GNCVD 1020

  Fly   256 VDECSYPNVCGPGAICTNLEGSYRCDCPPGYDGDGRSESGCVDQDECA-RTPCGRNADCLNTDGS 319
            ::||..|.:|..|. |.|:|||:||.|.|||:.. ..:.||.|.|||| |..|.... ||||:||
  Rat  1021 MNECLTPGICAHGR-CINMEGSFRCSCEPGYELT-PDKKGCRDVDECASRASCPTGL-CLNTEGS 1082

  Fly   320 FRC-LCPDGY-SGDPMNGCEDVDECATNNPCGLGAECVNLGGSFQCR-CPSGFVLEHDPHADQLP 381
            |.| .|..|| ..:....|||:||||....|..|. |.|..|||.|: |..||          .|
  Rat  1083 FTCSACQSGYWVNEDGTACEDLDECAFPGVCPTGV-CTNTVGSFSCKDCDRGF----------RP 1136

  Fly   382 QPLNTQQLGYGPGATDIAPYQRTSGAGLACLDIDECNQPDGVAKCGTNAKCINFPGSYRCLCPSG 446
            .||                       |.:|.|:|||..|......|   :|.|..|||:||||.|
  Rat  1137 SPL-----------------------GNSCEDVDECEGPQNSCLGG---ECKNTDGSYQCLCPQG 1175

  Fly   447 FQGQGYLHCENINEC-QDNPCGENAICTDTVGSFVCTCKPDY-TGDPFRGCVDIDECTALDKPC- 508
            ||......||:::|| .:..|..:..|.::.|||.|.|.|.: :.:....|.|:||| |..:|| 
  Rat  1176 FQLANGTVCEDVDECVGEEHCAPHGECLNSPGSFFCLCAPGFASAEGGTRCQDVDEC-ATTEPCL 1239

  Fly   509 GQHAVCENTVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEP 573
            |.|  |.||...:||.|..|:...||                                       
  Rat  1240 GGH--CVNTEGSFNCLCETGFQPAPD--------------------------------------- 1263

  Fly   574 IGSSCVDIDECRTHAE-VCGPHAQCLNTPGSYGC--ECEAGYVGSPPRMACKQPCEDVRCGAHAY 635
             ...|||||||....: |||.. :|.|:||||.|  .|:.|:..:|                   
  Rat  1264 -SGECVDIDECEDQGDPVCGDW-RCENSPGSYRCVLGCQPGFYVAP------------------- 1307

  Fly   636 CKPDQNEAYCVCEDGWTYNPSDVAAGCVDIDEC--DVMHGPFGSCGQNATCTNSAGGFTCACPPG 698
                                   ...|:|||||  |.:      ||.:..|.|:.|.|.|.|..|
  Rat  1308 -----------------------TGDCIDIDECANDTV------CGNHGFCDNTDGSFRCLCDQG 1343

  Fly   699 FSGDPHS-KCVDVDECRTGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSVRCVP-------I 755
            |...|.. :||||:||....:.|| .|.|.||. |.:.|.|..:..........|.|       |
  Rat  1344 FETSPSGWECVDVNECELMLAVCG-DALCENVE-GSFLCLCASDLEEYDAEEGHCRPRVAGAQRI 1406

  Fly   756 VSCSANEDCPGNSICDATKRCLCPEPNIGNDC--RH----PCEALNCGAHAQCMLANG-QAQCLC 813
            ......|...|.:               |.:|  .|    ||        :|.:..|. ||:|.|
  Rat  1407 PEVPTEEQAAGLT---------------GMECYAEHNGGPPC--------SQILGQNSTQAECCC 1448

  Fly   814 APGYTGNSALAGGCNDIDECRANPCAEKAICSNTAGGYLCQCPGGSSGDPYREGCITSKTVGCSD 878
            ..|     |..|     :.|  :||.     |..:..:...||.|....|. ||..|......:|
  Rat  1449 TQG-----ARWG-----ETC--DPCP-----SEDSVEFSELCPSGQGYIPV-EGAWTFGQAMYTD 1495

  Fly   879 ANPCAT-GETCVQDSYTGNSV----CICRQGYERNSENGQCQDVDECSVQRGKPACGLNALCKNL 938
            |:.|.. |....|:....|:|    |:|..||..::.:.:|||.:||.    ..||. |..|.|.
  Rat  1496 ADECILFGPALCQNGRCLNTVPGYICLCNPGYHYDAVSRKCQDHNECQ----DLACE-NGECVNT 1555

  Fly   939 PGSYECRCPQGHNGNPFIMCEICNTPECQCQSPYKLVGNSCVLSGCSSGQACPSGAECISIAGGV 1003
            .||:.|.|     ..|.|:               .|.|..|| :..||.:..|.....:.|....
  Rat  1556 EGSFHCFC-----SPPLIL---------------DLSGQRCV-NSTSSSEDFPDHDIHMDICWKK 1599

  Fly  1004 ---SYCACP-KGYQTQPDGSCVDVDECE--ERGAQLCAFGAQCVNKPGSYSCHCPEGYQGDAYNG 1062
               ..|:.| :|:.|.....|     |:  |..:|.||.              ||. ...:.|..
  Rat  1600 VTNDVCSQPLRGHHTTYTECC-----CQDGEAWSQQCAL--------------CPP-RSSEVYAQ 1644

  Fly  1063 LCALAQRKCAADRECAANEKCIQPGECVCPPP----------------YFLDPQD-------NNK 1104
            ||.:|  :..|:||...:   .:||....|.|                .:|.|:|       :|.
  Rat  1645 LCNVA--RIEAEREAGIH---FRPGYEYGPGPDDLPETLYGPDGAPFYNYLGPEDTVPEPPFSNT 1704

  Fly  1105 CK-------------SPCERFP--------------------CGI-----NAKCT-PSDPPQCMC 1130
            ..             .|.|..|                    |||     |.:|. ..:...|.|
  Rat  1705 ASHLGDNTPILEPPLQPSELQPHYIPSHSEPLASFEGLQAEECGILNGCENGRCVRVREGYTCDC 1769

  Fly  1131 EAGFKGD-PLLGCTDEDECSHLP-----CAYGAYCVNKKGGYQCVCPKDYTGDPYKSGC 1183
            ..||:.| .|:.|.|.:||..|.     ||:| :|.|.:|.|:|.|...|..:|....|
  Rat  1770 FEGFQLDTALMACVDVNECEDLNGPAALCAHG-HCENTEGSYRCHCSPGYVAEPGPPHC 1827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 12/32 (38%)
EGF_CA 212..247 CDD:238011 18/35 (51%)
EGF_CA 255..>286 CDD:214542 15/30 (50%)
EGF_CA 298..331 CDD:238011 18/35 (51%)
EGF_CA 338..373 CDD:238011 16/35 (46%)
EGF_CA 413..456 CDD:238011 18/42 (43%)
EGF_CA 457..490 CDD:238011 10/34 (29%)
EGF_CA 497..>529 CDD:214542 15/32 (47%)
EGF_CA 580..>612 CDD:214542 16/34 (47%)
EGF_3 676..702 CDD:289699 10/25 (40%)
EGF_CA 1022..1056 CDD:214542 7/35 (20%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
Ltbp2XP_006240412.1 EGF_CA 628..>657 CDD:214542
TB 689..725 CDD:279073
EGF_CA 897..931 CDD:238011 15/33 (45%)
EGF_CA 940..>970 CDD:214542 9/33 (27%)
EGF_CA 980..1015 CDD:238011 18/35 (51%)
EGF_CA 1020..1051 CDD:214542 16/31 (52%)
EGF_CA 1061..1101 CDD:284955 18/40 (45%)
EGF_CA 1103..1143 CDD:284955 20/73 (27%)
EGF_CA 1145..1184 CDD:284955 18/41 (44%)
EGF_CA 1186..1227 CDD:214542 10/40 (25%)
EGF_CA 1228..1259 CDD:214542 16/33 (48%)
EGF_CA 1313..1346 CDD:214542 16/38 (42%)
TB 1433..1468 CDD:279073 14/59 (24%)
EGF_CA 1495..1528 CDD:214542 10/32 (31%)
TB 1605..1640 CDD:279073 12/54 (22%)
EGF_CA 1784..>1818 CDD:214542 13/34 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11363
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45515
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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