DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpy and ltbp3

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:NP_001244070.1 Gene:ltbp3 / 562912 ZFINID:ZDB-GENE-060526-130 Length:1258 Species:Danio rerio


Alignment Length:1324 Identity:316/1324 - (23%)
Similarity:443/1324 - (33%) Gaps:524/1324 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 CNCVDKD--ENECKQRPCDVFAHCTNTL-GSFTCTCFPGY-RGNGFHCEDIDECQDPAIAARCVE 183
            |..|...  :|:|.:.|...:......: ..|..||..|| |.|..||:||:||....:.    .
Zfish   241 CGSVGNSWGQNKCYKCPLLPYTEKHQAIVEDFASTCPQGYKRLNSTHCQDINECMMSGVC----W 301

  Fly   184 NAECCNLPAHFLCKCKDGYEGDGEVLC--------------TDVDECR-------NPENC----- 222
            |.||.|....|.|.||.||.......|              |:..:|.       :.|.|     
Zfish   302 NGECLNTRGSFRCTCKPGYVLKERTRCVAATVELGYCFRMVTETGKCEHALSTRLSQEMCCCTVG 366

  Fly   223 ---GPNALCTNTPGNYTCS----CPDG-------YVGN-------------NPYRE--------- 251
               |.|  |...|.:.|.|    ||.|       |.|.             ||..|         
Zfish   367 KAWGSN--CERCPQDGTASFNKICPAGKGMSLQTYHGTLTFQPFLTSIEHINPDTEVKPPEVPIQ 429

  Fly   252 --------------------------------------------GCQDVDECSY-PNVCGPGAIC 271
                                                        ....:|||.. .|:||.| :|
Zfish   430 TTTPMHLSPISTHGPRRPVIVAKPTTPPIVLVPPEADSHEVSQTQVSPMDECKLNSNICGHG-VC 493

  Fly   272 TNLEGSYRCDCPPGYDGDGRSESGCVDQDECARTPCGRNADCLNTDGSFRCLCPDGY------SG 330
            .|.:..:.|.|.|||.....::. |.|::||...||||.. |||..||::|.|..||      ||
Zfish   494 ANTQNGFMCHCYPGYRSHALTKR-CEDENECDAQPCGRGV-CLNVLGSYKCNCHHGYRLSEISSG 556

  Fly   331 DPMNGCEDVDECATNNPCGLGAECVNLGGSFQCRCPSGF--VLEHDPHADQLPQPLNTQQLGYGP 393
              ...|.|::||.....||:|.:|:|..||::|.|..||  .::..||                 
Zfish   557 --KRSCSDINECLNTEICGVGGQCINQQGSYKCECLPGFRKKIQKPPH----------------- 602

  Fly   394 GATDIAPYQRTSGAGLACLDIDECNQPDGVAKCGTNAKCINFPGSYRCLCPSGFQGQGYLHCENI 458
                             |.||:||.:||                    :||              
Zfish   603 -----------------CEDINECLEPD--------------------ICP-------------- 616

  Fly   459 NECQDNPCGENAICTDTVGSFVC-TCKPDYTGDPFRG-CVDIDECTALDKPCGQHAV-----CEN 516
                      |..|.:|:||:.| .|:|.|..:  || |.|||||.       :|.|     |||
Zfish   617 ----------NEQCENTLGSYECLPCQPGYRAE--RGVCHDIDECK-------KHGVCLNGRCEN 662

  Fly   517 TVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIEN----QCFCLDGFEPI--G 575
            ....|.|.|.:|:..:.:.| .|.  |:| .|..|..|. |..||..    :|.|..|::|.  |
Zfish   663 LAGSYRCLCNEGFLPEANRK-GCR--DIN-ECQDNRLCA-NGHCINTDGSFRCQCYAGYQPTQEG 722

  Fly   576 SSCVDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGAHAYCKPDQ 640
            |.|.||:||:..|. | ...:|:||.|||.|||:.||.              :..|.|       
Zfish   723 SHCEDINECKRAAN-C-QRGRCINTMGSYRCECQKGYT--------------LENGRH------- 764

  Fly   641 NEAYCVCEDGWTYNPSDVAAGCVDIDECDVMHGPFGSCGQNATCTNSAGGFTCACPPGF--SGDP 703
                                 |.||:|||   |....|..:..|.|..||:.|.|..||  |.|.
Zfish   765 ---------------------CKDINECD---GERSLCQPHGVCENRQGGYVCVCNDGFRLSEDK 805

  Fly   704 HSKCVDVDECRTGASKCGAGAEC-VNVPGGGYTCRCPGNTIADPDPSVRCVPIVSCSANEDCPGN 767
            || |..::..:         .|| :|:                 |.:|.|..:::.:..:     
Zfish   806 HS-CEKIESDK---------KECYLNL-----------------DDTVFCDSVLATNVTK----- 838

  Fly   768 SICDATKRCLCPEPNIGNDCRHPCEALNCGA------HAQCMLANG--QAQCLCAPGYTGNSALA 824
                  :.|.|   :||......||...|..      |:.|.:..|  ..|.....|:..:    
Zfish   839 ------QECCC---SIGVGWGDHCEIYPCPVYRSAEYHSLCPIGRGFYHDQEKIEYGFVAH---- 890

  Fly   825 GGCNDIDEC--RANPCAEKAICSNTAGGYLCQCPGGSSGDPYREGCITSKTVGCSDANPCATGET 887
               .|||||  .:|...::..|.||..|:                                    
Zfish   891 ---RDIDECVLFSNEICKEGRCMNTQPGF------------------------------------ 916

  Fly   888 CVQDSYTGNSVCICRQGYERNSENGQCQDVDECSVQRGKPACGLNALCKNLPGSYECRC-----P 947
                      .|.|:||:..:|...:|.|||||   ..:..| :|..|.|..||:.|.|     |
Zfish   917 ----------ECYCQQGFYYDSNLLECIDVDEC---HDESLC-INGHCVNTRGSFYCVCDPPWVP 967

  Fly   948 QGHNGNPFIMCEICNTPEC----QCQSPYKLVGNSCVLSGCSSGQACPSGAECISIAGGVSYCAC 1008
            ..:|       :.|..|..    :||.|          :.|.:||       |::..... ||.|
Zfish   968 DAYN-------KKCVFPTIIGIDECQDP----------ANCKNGQ-------CVNTQDSY-YCLC 1007

  Fly  1009 PKGYQTQPD-GSCV----------------DVDECEERGAQLCAFGAQCVNKPGSYSCHCPEGYQ 1056
            ...:....| .|||                ||:|||:  ...|..| :|||.|||:.|.|.:...
Zfish  1008 SPPWTLASDRNSCVTPEEQAVMGVSVVHLTDVNECED--PSYCRNG-RCVNTPGSFHCICTQPLT 1069

  Fly  1057 GDAYNGLCALAQRKCAADRECAANEKCIQPGECVCPPPYFLDPQDNNKCKSPCERFPCGINAKCT 1121
            ..|       |.::|..|...||::.       :|    |.:..:::.|..|........:..|.
Zfish  1070 FSA-------ALKQCVYDDRTAAHKD-------IC----FQEVDEDHMCTMPRNELTVTYSECCC 1116

  Fly  1122 PSD---PPQC-------------MC------EAGFKGDPLLGCT-----------DEDECSHLPC 1153
            ...   .|:|             :|      |:..:||.|...:           |.||||   |
Zfish  1117 HYGRGWGPECRTCPMRNTVLFNRLCEMHLETESDGEGDFLAAFSTYNPEGDSSEEDSDECS---C 1178

  Fly  1154 AYGAYCVNKKGGYQCVCPKDYTGDPYKSGCIFESGTPKSKCLSNDDCASNLACLEGSCVSPCSSL 1218
            |.|. ||....|..|.|         .:|.:.:..  :::|...|:||.     .|:..|||   
Zfish  1179 ANGR-CVRSYLGTMCEC---------NTGFVLDHS--RTRCTDIDECAG-----RGTGQSPC--- 1223

  Fly  1219 LCGSNAYCETEQHAGWCRCRVGYV 1242
               .||.|.....:..|:|::|:|
Zfish  1224 ---KNARCINTFGSFRCQCKLGFV 1244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 8/30 (27%)
EGF_CA 212..247 CDD:238011 14/73 (19%)
EGF_CA 255..>286 CDD:214542 12/31 (39%)
EGF_CA 298..331 CDD:238011 17/38 (45%)
EGF_CA 338..373 CDD:238011 14/36 (39%)
EGF_CA 413..456 CDD:238011 8/42 (19%)
EGF_CA 457..490 CDD:238011 9/33 (27%)
EGF_CA 497..>529 CDD:214542 13/36 (36%)
EGF_CA 580..>612 CDD:214542 15/31 (48%)
EGF_3 676..702 CDD:289699 10/27 (37%)
EGF_CA 1022..1056 CDD:214542 15/33 (45%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
ltbp3NP_001244070.1 EGF_CA 290..>320 CDD:214542 12/33 (36%)
TB 348..382 CDD:279073 7/35 (20%)
EGF_CA 562..594 CDD:214542 13/31 (42%)
EGF_CA 605..640 CDD:214542 17/80 (21%)
EGF_CA 645..>675 CDD:214542 13/36 (36%)
EGF_CA 686..726 CDD:214542 14/41 (34%)
EGF_CA 727..766 CDD:214542 19/82 (23%)
EGF_CA 767..809 CDD:214542 19/45 (42%)
TB 828..865 CDD:279073 8/50 (16%)
EGF_CA 935..>965 CDD:214542 13/33 (39%)
EGF_CA 982..1012 CDD:214542 10/47 (21%)
EGF_CA 1038..>1064 CDD:214542 14/28 (50%)
TB <1109..1135 CDD:279073 3/25 (12%)
EGF_CA 1209..>1243 CDD:214542 12/44 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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