DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and nid1a

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_691156.5 Gene:nid1a / 562690 ZFINID:ZDB-GENE-050302-58 Length:1175 Species:Danio rerio


Alignment Length:1011 Identity:200/1011 - (19%)
Similarity:302/1011 - (29%) Gaps:427/1011 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 VDKDEN-----------ECKQRPCDVFAHCTNTLGSFTCTCFPGYRGNGFHC--EDIDECQDPAI 177
            ::.|:|           :|..:.|..||.|:..    .|.|.|||.|:|.||  |.:.:..:..:
Zfish   322 IENDDNIQVDVFTYNSGQCGGQKCSKFAECSGR----CCVCKPGYYGSGVHCVPEGVPQRMNGKV 382

  Fly   178 AARC-VENA----ECCNLPAHFLCKCKDG------------------------------------ 201
            :.|. |.|:    :..:...|......||                                    
Zfish   383 SGRVFVGNSPVPVDFASNDLHSYVVANDGRAYVAISAIPPVIGFSLQPLSSVGGVIGWAFALQQP 447

  Fly   202 --------------------YEGDGEVLCTD-------------VD---ECRNPE---------- 220
                                ::..||.|...             ||   |.:.||          
Zfish   448 GFKNGFSIIGGEFKRQADVSFQPGGEKLTISQEFRGIDEHDHLMVDTRLEGKIPEVPQGATVQID 512

  Fly   221 ------NCGPNALCTNTPGNYTCSCPDGYVGNNPYR-------EGCQDVDEC------------- 259
                  ....|.:.:::...|..|.|||...:..|.       :||| .||.             
Zfish   513 SYSEIYQYSINLITSSSTREYVISLPDGSTQSRSYNFRETITFQGCQ-FDEVPSTQMLSVEQVFV 576

  Fly   260 ------------------------SYPNVCGPG-------AICTNLEGS-YRCDCPPGYDGDGRS 292
                                    |..|.|..|       |:|...:|: :.|:|..|:.||||:
Zfish   577 MYDMGAQLLRYAMSNKIGDVNGGQSEENACFTGRHGCDTNAVCKPGQGNQFTCECAAGFTGDGRA 641

  Fly   293 ESGCVDQDECARTP--CGRNADCLNTDGSFRCLCPDG--YSGDPMNGCE---DVDECAT-NNPCG 349
               |.|.|||..||  ||:|:.|.|..|:|||.|.||  ::.|.....|   .||.|.: .:.|.
Zfish   642 ---CYDIDECRETPQICGQNSICNNQPGTFRCECLDGFQFASDGQTCVEVHRPVDPCRSGTHDCD 703

  Fly   350 L--GAECVNLGG-SFQCRCPSGFVLEHDPHADQLPQPLNTQQLGYGPGATDIAPYQRTSGAGLAC 411
            :  .|.|...|| |:.|.|..||:                                   |.|..|
Zfish   704 VPERARCSYTGGSSYICTCAPGFM-----------------------------------GDGRRC 733

  Fly   412 LDIDECNQPDGVAKCGTNAKCINFPGSYRCLCPSGFQGQGY------------LHCENI-----N 459
            .|||||.    |.:|..||.|.|.|||:.|.|..||.|.|:            ||.|::     :
Zfish   734 QDIDECQ----VNQCHENAVCFNTPGSFSCQCNPGFHGDGFYCSTEREKTRCELHKESVVGFGPH 794

  Fly   460 ECQDNPCGENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCENTVPGYNCK 524
            ..:..|           |.||.||......:|.:....|.:|..:|:. |:......|.||....
Zfish   795 SARPQP-----------GRFVPTCDAQGRYEPMQCHASIGQCWCVDRD-GEEISGTRTGPGRFPV 847

  Fly   525 CPQGYDGK------PDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFE----------- 572
            | :|:|..      |:|.::......:||    |..:...|.|.     |||..           
Zfish   848 C-RGHDESGPIRPTPNPNISPLPPGSHIL----FTQSGKIEYIP-----LDGHNLKKNEAKTALH 902

  Fly   573 -----PIGSSCVDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGA 632
                 .||.:...:::.....::..|.....|..|....:.....:|||..:|..      ..|.
Zfish   903 LPEKVVIGIAYDCVEKMIYWTDISTPAISRANLQGGEPVQLIKSDIGSPEGIAID------HLGR 961

  Fly   633 HAYCKPDQNEAYCVCEDGWTYNPSD-VAAGCVD------IDECDVMHGPFGSCGQNATCTNSAGG 690
            :.:               ||.:..| :....:|      :...|:::       ..|..|:|..|
Zfish   962 NMF---------------WTDSMKDRIEVSSLDGTQRRVLVNTDLVN-------PRAILTDSTNG 1004

  Fly   691 FTCACPPGFSGD-----PHSKCVDVDECRTGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSV 750
            :.      :..|     |..:...:|    |.::.....:.:::|.|         ...||..|:
Zfish  1005 YI------YWADWNRESPKIEMAYMD----GTNRRVLAKDDLSLPNG---------LTYDPQTSL 1050

  Fly   751 RCVPIVSCSANEDCPGNSICDA-TKRCLCPEPNIG------NDCRHPCEALNCG----------- 797
            .|                ..|| |.:..|..|..|      .:.::|......|           
Zfish  1051 LC----------------WADAGTHKVECMNPQQGRRTQLMEEIQYPFGLTTDGKNFYYTDWTRV 1099

  Fly   798 -----------------------------AHAQCMLANGQAQCLCAPGYTGNSALAGGCNDIDEC 833
                                         |||:|  ..||..|         |:..|||..    
Zfish  1100 SVVVVDRHLRREVDEFQPQKRTRLYGITTAHARC--PAGQNYC---------SSNNGGCTH---- 1149

  Fly   834 RANPCAEKAICSNTAGGYLCQCPGGSSGDPYREGCI 869
                     :|..|..|..|:||..::    ..||:
Zfish  1150 ---------LCLATPAGRSCRCPDNAA----ELGCV 1172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 11/28 (39%)
EGF_CA 212..247 CDD:238011 11/66 (17%)
EGF_CA 255..>286 CDD:214542 11/75 (15%)
EGF_CA 298..331 CDD:238011 18/36 (50%)
EGF_CA 338..373 CDD:238011 13/38 (34%)
EGF_CA 413..456 CDD:238011 22/54 (41%)
EGF_CA 457..490 CDD:238011 6/37 (16%)
EGF_CA 497..>529 CDD:214542 8/31 (26%)
EGF_CA 580..>612 CDD:214542 3/31 (10%)
EGF_3 676..702 CDD:289699 4/25 (16%)
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
nid1aXP_691156.5 NIDO 103..250 CDD:295411
nidG2 373..594 CDD:238158 26/221 (12%)
EGF_3 606..642 CDD:289699 12/38 (32%)
EGF_CA 644..686 CDD:214542 19/41 (46%)
EGF_3 695..733 CDD:289699 13/72 (18%)
EGF_3 739..772 CDD:289699 16/36 (44%)
Thyroglobulin_1 781..848 CDD:278514 17/78 (22%)
SGL 903..1130 CDD:285626 37/289 (13%)
Ldl_recept_b 920..957 CDD:278487 7/36 (19%)
LY 942..983 CDD:214531 9/61 (15%)
LY 984..1028 CDD:214531 9/60 (15%)
LY 1029..1065 CDD:214531 10/60 (17%)
FXa_inhibition 1140..>1164 CDD:291342 10/45 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 52 1.000 Domainoid score I11430
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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