DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpy and thbs1b

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_005160819.1 Gene:thbs1b / 561901 ZFINID:ZDB-GENE-020708-1 Length:1171 Species:Danio rerio


Alignment Length:1079 Identity:221/1079 - (20%)
Similarity:320/1079 - (29%) Gaps:474/1079 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LSSAVHSQYSQQ-PQPFKTNL---RANSRFRGEVFYLNLENGYF-------------GCQVNEST 62
            |.:::|:..:|: |...|..:   ....||.|.     |:|..|             |||.:..|
Zfish   178 LDASIHTILTQEIPGVAKMRIGKGAVKDRFMGV-----LQNVRFVFGTTLEAILRNKGCQNSAMT 237

  Fly    63 EYLQLFN--------------------LSKLCD-GTQDCF--------LG--ADELSKELKCTND 96
            :.:.|.|                    |..:|. ..:|..        ||  ..|||.||:...|
Zfish   238 DIITLDNPINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAAMFKELKGLGVVVQELSNELRKVTD 302

  Fly    97 CDKD------GTKCTHGACL-NGVCHCN------DGYGGCNCVDK-------------------D 129
             ||:      |.:.  |.|| ||:.|.|      |....|.|.:.                   .
Zfish   303 -DKNMLMNQMGIRA--GVCLHNGIVHKNKEEWTVDDCTECTCQNSATVCRKISCPLIPCANATVP 364

  Fly   130 ENECKQR-------------PCDVFAHCTNTLGSFTCTCFPGYRGNGFHCEDI-DECQDPAIAAR 180
            :.||..|             |...:.||       :.:|..|.:..|..|:.| :.|:..::..|
Zfish   365 DGECCPRCGTPSDSAEDGWSPWSEWTHC-------SVSCGRGIQQRGRSCDRINNNCEGTSVQTR 422

  Fly   181 CVENAECCNLPAHFLCKCKDGYEGDGEVLCTDVDECRNPENCGPNALCTNTPGNYTCSCPDGYVG 245
                 :|      :|.:|...::.||           :..:..|.:.|:.|              
Zfish   423 -----DC------YLQECDKRFKQDG-----------SWSHWSPWSSCSVT-------------- 451

  Fly   246 NNPYREGCQDVDECSYPNVCGPGAI-----CTN----LEGSYRCDCPPGYDGDGRSESGCVDQDE 301
                               ||.|.|     |.:    ::|.   ||    .|:||      ..:.
Zfish   452 -------------------CGAGVITRIRLCNSPTPQMDGK---DC----QGEGR------QTER 484

  Fly   302 CARTPCGRNADCLNTDGSFRCLCPDGYSGDPMNG----CEDVDECAT-------------NNPCG 349
            |.::||                        |:||    ....|.|:.             |||..
Zfish   485 CEKSPC------------------------PINGGWGPWSPWDTCSVTCGGGVQNRKRLCNNPVP 525

  Fly   350 L--GAECVNLGGSFQCRCPSGFVLEHDPHADQLPQPLNTQQLGYGPGATDIAPYQRTSGAGLACL 412
            .  |.|||.                 |....|:   .|.|                      || 
Zfish   526 KHGGKECVG-----------------DAKVSQI---CNKQ----------------------AC- 547

  Fly   413 DIDEC-NQPDGVAKCGTNAKCINFP-GSYRC-LCPSGFQGQGYLHCENINECQDNPCGENAICTD 474
            .:|.| :.|     |...|:|.:|| ||::| .||:|:.|.| ::|:::|||::.|         
Zfish   548 PVDGCLSSP-----CFEGAQCTSFPDGSWKCGKCPTGYTGNG-INCKDVNECKEVP--------- 597

  Fly   475 TVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCENTVPGYNC-KCPQGYDGKPDP--- 535
                                    |.|...:   |.|. |||||||||| .||..|.| |.|   
Zfish   598 ------------------------DACFEFN---GVHR-CENTVPGYNCLPCPTRYTG-PQPFGR 633

  Fly   536 ----KVACEQVDV--NILCSSNFDCTNNAECIEN----------QCFCLDGFEPIGSSC---VDI 581
                ..|.:||..  |.....:.||..||.|  |          :|.|..||...|..|   .|:
Zfish   634 GVEDAAAKKQVCTPRNPCLDGSHDCNKNARC--NYLGHFSDPMFRCECKPGFAGNGHICGEDTDL 696

  Fly   582 DECRTHAEVCGPHA-------QCLNTPGSYGCECEAGYVGSPPRMACKQPCE-----DVRCGAHA 634
            |.......||..:|       .|.|.|.|...:.:...:|.    ||....:     |.|.....
Zfish   697 DGWPNADLVCVENATYHCKKDNCPNLPNSGQEDYDKDGIGD----ACDDDDDDDGIPDDRDNCPL 757

  Fly   635 YCKPDQNEAYCVCEDGWTYNPSDVAAGCVDIDECDVMHGPFGSCGQNATCTNSAGGFTCA----- 694
            ...|.|          :.|:..||...|   |.|     |:.|........|:..|..||     
Zfish   758 VFNPRQ----------YDYDRDDVGDRC---DNC-----PYNSNPDQTDTDNNGEGDACAVDIDG 804

  Fly   695 ---------CPPGFSGDPHSKCVDVDECRTGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSV 750
                     ||..::.|  .|..|:|         |.|.:|.|         ||  ...:||   
Zfish   805 DGILNEKDNCPYLYNVD--QKDTDLD---------GVGDQCDN---------CP--LEHNPD--- 844

  Fly   751 RCVPIVSCSANEDCPGNSICDATKRCLCPEPNIGNDCRHPCEALNCGAHAQCMLANGQAQCLCAP 815
                  ...::.|..|:. ||:.:       :|..|                             
Zfish   845 ------QLDSDSDRVGDK-CDSNQ-------DIDED----------------------------- 866

  Fly   816 GYTGNSALAGGCNDIDECRANPCAEKAICSNTAGGYLCQCPGGSSGDP-YREGCITSKTVGCSDA 879
                     |..|::|.|...|.|.:|.......|..|.....:.|.| .::.|.........|:
Zfish   867 ---------GHQNNLDNCPYIPNANQADHDKDGKGDACDYDDDNDGIPDEKDNCRLVFNPDQLDS 922

  Fly   880 NPCATGETCVQDSYTGNSVCICRQGYERNSENGQCQDVD 918
            :....|:.|..|....|.:.|    |:...||....:.|
Zfish   923 DGDGRGDACKDDFDMDNVLDI----YDVCPENFDISETD 957

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 6/28 (21%)
EGF_CA 212..247 CDD:238011 3/34 (9%)
EGF_CA 255..>286 CDD:214542 8/39 (21%)
EGF_CA 298..331 CDD:238011 3/32 (9%)
EGF_CA 338..373 CDD:238011 9/49 (18%)
EGF_CA 413..456 CDD:238011 16/45 (36%)
EGF_CA 457..490 CDD:238011 4/32 (13%)
EGF_CA 497..>529 CDD:214542 16/32 (50%)
EGF_CA 580..>612 CDD:214542 9/38 (24%)
EGF_3 676..702 CDD:289699 7/39 (18%)
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
thbs1bXP_005160819.1 LamG 25..220 CDD:304605 11/46 (24%)
VWC 318..372 CDD:278520 11/53 (21%)
TSP1 383..430 CDD:214559 12/64 (19%)
TSP1 448..491 CDD:214559 16/112 (14%)
TSP1 496..548 CDD:214559 15/94 (16%)
EGF_3 651..690 CDD:289699 11/40 (28%)
TSP3 repeat_1C 692..727 CDD:275367 9/34 (26%)
TSP3 repeat_short 764..786 CDD:275365 8/29 (28%)
TSP_3 788..822 CDD:280556 7/35 (20%)
TSP3 repeat_long 788..822 CDD:275366 7/35 (20%)
TSP3 repeat_short 823..845 CDD:275366 11/50 (22%)
TSP3 repeat_long 846..883 CDD:275365 12/82 (15%)
TSP_3 847..883 CDD:280556 12/81 (15%)
TSP3 repeat_short 884..919 CDD:275366 6/34 (18%)
TSP_3 921..950 CDD:280556 7/32 (22%)
TSP_C 973..1170 CDD:283408
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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