DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and Specc1

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_030101968.1 Gene:Specc1 / 432572 MGIID:2442356 Length:1072 Species:Mus musculus


Alignment Length:1083 Identity:210/1083 - (19%)
Similarity:352/1083 - (32%) Gaps:293/1083 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  4345 PSRSADRTTP-SES-------------PETPTTLPSDFTTRPHSEQTTESTRDVPTTRPFEASTP 4395
            ||.||:...| ||:             |.|....|.....|..|.|.|     :|||:  ....|
Mouse    62 PSGSAEHGQPLSEAGGARDRSVGCGSRPLTAAPFPHRGPPRRGSRQGT-----IPTTK--RTGIP 119

  Fly  4396 SPASLETTVPSVTLETTTNVPIGSTGGQVTGQTTSS-----PSE-VRTTIR--------VEESTL 4446
            :|..|     |||:....:||.|.:..:..|.:.:|     |:: :|||..        .|::.|
Mouse   120 APREL-----SVTISRERSVPRGPSSSKKLGSSPTSSCNPTPTKHLRTTPAKPKQEHEGAEKAVL 179

  Fly  4447 PSRSADRTTPSESPETPTTLPSDFITRPHSEKTTESTRDVPTTRPFEASTPSSASLETTVPSVTL 4511
            .|:..:....:::.::.       |.|..||......|...:|....||.||:            
Mouse   180 ESQVRELLAEAKTKDSE-------INRLRSELKKCKERWALSTEDANASDPSA------------ 225

  Fly  4512 ETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSADRTTLSESPETPTTLPSDFTI-- 4574
                            |.|.|..|:.:..||..|.   .....:..|::..|....|....|.  
Mouse   226 ----------------EGTASPESDAQPLIRTLEE---KNKTFQKELADLEEENRALKEKLTYLE 271

  Fly  4575 -RPHSEQTTESTRDVPTTRPFEASTPSPASLETTVPSVTSETTTNVPIGSTGGQVTGQTTAPPSE 4638
             .|:||.....|.|        :|.|:         |:|.|::...|:|:   :::.:|    .|
Mouse   272 QSPNSEGAASHTGD--------SSCPT---------SITHESSFGSPVGN---ELSSET----DE 312

  Fly  4639 F-RTTIRVEESTLPSRSTDRTTPSESPETPTI--LPSDSTTRTYSDQTTESTRDVPTTRPFEAST 4700
            : |||......|..|.|:|.|..|.||:....  :.:|:.:|..|          .|:.||::|.
Mouse   313 YRRTTHGSALRTSGSSSSDVTKASLSPDASDFEHITADTPSRPLS----------ATSNPFKSSK 367

  Fly  4701 PSPA------SLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSADR 4759
            .||.      :.|.::.|:|.:..          ::.|...|:..|::.|:: |.|.......:.
Mouse   368 GSPTGSSPNNASELSLASLTEKIQ----------KMEENQHSTAEELQATLQ-ELSDQQQMVQEL 421

  Fly  4760 TTPSES-PETPTTLPSDFITRPHSEKTTESTRDVPTTRPFEASTPSSASLETTVPSVTLETTTNV 4823
            |..:|. .:..|.|.:.|  ..|.|:..:.:::                 ...:.::..|...|.
Mouse   422 TAENEKLVDEKTILETSF--HQHRERAEQLSQE-----------------NEKLINLLQERVKNE 467

  Fly  4824 PIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSADRTTPSESPETPTTLPSDFITRPHSE--- 4885
            ...:.||:|.| .....:::....|.|...|.:.....|......|.......|.|.....|   
Mouse   468 EPSAQGGKVLE-LEQKCTDILEKSRFEREKLLNIQQQLTCSLRKVEEENQGAIDMIKHLKEENEK 531

  Fly  4886 ----------------KTTESTRDVPTTRPFEASTPSSASLETTVPSVTLETTTNVPIGSTGGQV 4934
                            ||.|..|..     .|.....:.||:..:.:   :....:...||.||.
Mouse   532 LNGFLEHERCNNSVMAKTLEECRVT-----LEGLKMENGSLKALLEA---DKQKAIEASSTVGQT 588

  Fly  4935 TEQTTSSPSEVRTTIRVEESTLPSRSTDRTTPSESPETPTTLPSDFTTRPHSEQTTESTRDVPTT 4999
            .|  .....|:....|.|:..|....|:.                      .::..::..::...
Mouse   589 AE--NFEVQEMLKVARAEKDQLQLSCTEL----------------------RQELLKANGEIKHV 629

  Fly  5000 RPFEASTPSPASLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVR---------------- 5048
            ....|......|....|.....|     .:..|..::.|:.:.|.:|::                
Mouse   630 SSLLAKMEKDYSYLKEVCDHQAE-----QLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQH 689

  Fly  5049 TTIRVEESTLPSRSADRTTPSESPETPTTLPSDFITRTYSDQTTESTR---DVPTTRPF--EAST 5108
            ..:::..:.|.|.........|..::........:|:...::|.|..|   |:.|....  :...
Mouse   690 RAVKLHNNQLISELEGSVIKLEEQKSDLERQLKTLTKQIKEETEEWRRFQADLQTAVVVANDIKC 754

  Fly  5109 PSPASLETTVPSVTSETTTNVPIGSTGGQVTGQTTAPPSEFRTTIRVEESTLPSRS--------- 5164
            .:...|.|....:..|...|..:....|.:.|.:..          |.|...||.:         
Mouse   755 EAQQELRTVKRRLLEEEEKNARLQKELGDIQGHSRP----------VNEEPEPSEADAAGRWRGV 809

  Fly  5165 -TDRTT--PSESPETPTTLPSDFTTRPHSDQTTESTRDVPTTRPFEASTPSPASLETTVPSVTLE 5226
             .:||:  ||:|..|..:|...|.. .||..|.:|.....|.|       ||.|      .:.:.
Mouse   810 YVNRTSPAPSDSATTVKSLIKSFDL-GHSGGTGQSISVHKTPR-------SPLS------GIPVR 860

  Fly  5227 TTTNVPIGSTGGQVTEQTTSS--PSEVRTTIRVEESTLP------SRSADRTTPSESPETPTLPS 5283
            |   .|..:........|.||  |:...|:.|::...||      .|:.||.:.....::|:|.|
Mouse   861 T---APAAAVSPMQRHSTYSSMKPASKGTSQRLDLPDLPLSDLLKGRAEDRKSDPYLRKSPSLES 922

  Fly  5284 DFTTRPHSEQTTESTRDVPATRPFEAST----PSPASLETTVP 5322
              .:||.|       .....||...|||    ||..|:|...|
Mouse   923 --LSRPPS-------LGFGNTRLLSASTGGLKPSKLSVERRDP 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699
EGF_CA 212..247 CDD:238011
EGF_CA 255..>286 CDD:214542
EGF_CA 298..331 CDD:238011
EGF_CA 338..373 CDD:238011
EGF_CA 413..456 CDD:238011
EGF_CA 457..490 CDD:238011
EGF_CA 497..>529 CDD:214542
EGF_CA 580..>612 CDD:214542
EGF_3 676..702 CDD:289699
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395 82/366 (22%)
DUF4758 4275..4448 CDD:292572 34/130 (26%)
DUF4758 4377..4574 CDD:292572 42/210 (20%)
DUF4758 4581..4754 CDD:292572 40/181 (22%)
DUF4758 4683..4847 CDD:292572 28/170 (16%)
DUF4758 4785..4964 CDD:292572 31/197 (16%)
DUF4696 4841..5385 CDD:292395 98/546 (18%)
DUF4758 4887..5098 CDD:292572 31/229 (14%)
DUF4758 5193..5371 CDD:292572 36/142 (25%)
DUF4758 5294..5487 CDD:292572 10/33 (30%)
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
Specc1XP_030101968.1 PHA03307 36..>151 CDD:223039 27/100 (27%)
Smc <165..533 CDD:224117 88/470 (19%)
SMC_prok_B <372..740 CDD:274008 62/435 (14%)
PRK00409 <697..>797 CDD:234750 17/109 (16%)
CH 969..1072 CDD:366016
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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