DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and Specc1

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_006246564.2 Gene:Specc1 / 303208 RGDID:1309718 Length:1058 Species:Rattus norvegicus


Alignment Length:1083 Identity:212/1083 - (19%)
Similarity:375/1083 - (34%) Gaps:258/1083 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  4448 SRSADRTTPSESPETPTTLPSDFITRPHSEKTTESTRDVPTTRPFEA--STPSSASLETTV--PS 4508
            |...|||.|  .|.||:.:           |:::|:    |:..||:  |....||.|..:  |.
  Rat    16 SHGPDRTRP--LPGTPSGM-----------KSSKSS----TSLAFESRLSKLKRASSEDMLNKPG 63

  Fly  4509 VTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSADRTTLSESPETPTTLPSDFT 4573
            ........:...||.|.::|.|.|       .:|....|:|  :..||.:....|...|:..:.:
  Rat    64 SASSGVARLKKTSTSGAISELTES-------RLRSNTGTIP--TTKRTGIPAPRELSVTISRERS 119

  Fly  4574 IRPHSEQTTESTRDVPTTRPFEASTPSPAS-LETT--VPSVTSETTTNVPIGSTGGQVTGQTTAP 4635
            : |....:::.....||:    :..|:|.. |.||  .|....|.|....:.|...::..:....
  Rat   120 V-PRGPSSSKKLGSSPTS----SCNPTPTKHLRTTPAKPKQEHEGTEKAVLESQVRELLAEAKTK 179

  Fly  4636 PSEF------------RTTIRVEESTLPSRSTDRTTPSESPETPTILPSDSTTRTYSDQTT---E 4685
            .||.            |..:..|:|.....||:.|:...|...|.|...:...:|:..:..   |
  Rat   180 DSEINRLRSELKKCKERWALGTEDSNASDPSTEGTSVPGSDTEPLIRTLEEKNKTFQKELADLEE 244

  Fly  4686 STRDVPTTRPFEASTPSPASL-----ETTVP-SVTLETTTNVPIGSTGGQVTEQ--TTSSPSEVR 4742
            ..|.:.....:...:|:....     :::.| |:|.|::...|:|:.....|::  ..:..|.:|
  Rat   245 ENRALKEKLTYLEQSPNSEGAASHTGDSSCPTSITHESSFGSPVGNELSSETDEYRRNTHGSALR 309

  Fly  4743 TTIRVEESTLPSRSADRTTPSESPETPTTLPSDFITRPHSEKTTESTRDVP---TTRPFEA---- 4800
            |:        .|.|:|.|..|.||:.     |||      |..|..|...|   |:.||::    
  Rat   310 TS--------GSSSSDVTKASLSPDA-----SDF------EHITADTPSRPLSATSNPFKSSKGS 355

  Fly  4801 ---STPSSASLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSADRT 4862
               |:|::|| |.::.|:|.:..          ::.|...|:..|::.|:: |.|.......:.|
  Rat   356 PTGSSPNNAS-ELSLASLTEKIQ----------KMEENQHSTAEELQATLQ-ELSDQQQMVQELT 408

  Fly  4863 TPSES-PETPTTLPSDFITRPHSEKTTESTRDVPTTRPFEASTPSSASLETTVPSVTLETTTNVP 4926
            ..:|. .:..|.|.:.|  ..|.|:..:.:::                 ...:.::..|...|..
  Rat   409 AENEKLVDEKTILETSF--HQHRERAEQLSQE-----------------NEKLINLLQERVKNEE 454

  Fly  4927 IGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSTDRTTPSESPETPTTLPSDFTTRPHSEQTTE 4991
            ..:.||::.| .....:::....|.|...|.:.....|......|.......|..  .|.::..|
  Rat   455 PSAQGGKILE-LEQKCTDILEKSRFEREKLLNIQQQLTCSLRKVEEENQGAIDMI--KHLKEENE 516

  Fly  4992 STRDVPTTRPFEASTPSPASLE-----TTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVRTT- 5050
            ..               ...||     .:|.:.|||                       |.|.| 
  Rat   517 KL---------------SGFLEHERCNNSVMAKTLE-----------------------ECRVTL 543

  Fly  5051 --IRVEESTLPSR-SADRTTPSESPETPTTLPSDF-------ITRTYSDQ----TTESTRDVPTT 5101
              :::|..:|.:. .||:....|:..|......:|       :.|...||    .||..:::   
  Rat   544 EGLKMENGSLKAHLEADKQKAVEASSTMGQTAENFEVQEMLKVARAEKDQLQLSCTELRQEL--- 605

  Fly  5102 RPFEASTPSPASLETTVPSVTSETTTNVPIGSTGGQVTGQTTAPPSEFRTTIRVEESTLPSRSTD 5166
                      ......:..|:|.........|...:|........|  ||:::::|....|.:..
  Rat   606 ----------LKANGEIKHVSSLLAKMEKDYSYLKEVCDHQAEQLS--RTSLKLQEKASESDAEI 658

  Fly  5167 RTTPSESPETPTTLPSDFTTRPHSDQTTESTRDVPTTRPFEASTPSPASLETTVPSVTLETTTNV 5231
            :.......|....:......:.|::|.. |..:....:..|..:.....|:|....:..|     
  Rat   659 KDMKETIFELEDQVEQHRAVKLHNNQLI-SELESSVVKLEEQKSDLERQLKTLTKQIKEE----- 717

  Fly  5232 PIGSTGGQVTEQTTSSPSEVRTTIRVE-----ESTLPSRSADRTTPSESPETPTLPSDF-----T 5286
                     ||:.....::::|.:.|.     |:....|:..|....|..:...|..:.     .
  Rat   718 ---------TEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRRLLEEEEKNARLQKELGDIQGH 773

  Fly  5287 TRPHSEQTTEST-------RDVPATRPFEASTPSPASLETTVPSVTSEATTNVPIGSTGGQVTEQ 5344
            :||.:|:...|.       |.|...|    ::|:|:...|||.|:..    :..:|.:||  |.|
  Rat   774 SRPVNEEAEPSEVDAAGRWRGVYVNR----TSPAPSDSATTVKSLIK----SFDLGHSGG--TGQ 828

  Fly  5345 TTSSPSEVRTTIRVEESTLPSRSTD--RTSPSESPETPTTL-PS--------DFTTRPHSDQTTE 5398
            :.|    |..|.|...|.:|.|:..  ..||.:...|.::: |:        |....|.||....
  Rat   829 SIS----VHKTPRSPLSGIPVRTAPAAAVSPMQRHSTYSSMRPASKGMSQRLDLPDLPLSDLLKG 889

  Fly  5399 CTRDVPTTRPFEASTPSSASLETTVPSVTLETTTNVPIGSTGG 5441
            .|.| ..:.|:...:||..|| :..||:.. ..|.:...||||
  Rat   890 RTED-RKSDPYLRKSPSLESL-SRPPSLGF-GNTRLLSASTGG 929

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699
EGF_CA 212..247 CDD:238011
EGF_CA 255..>286 CDD:214542
EGF_CA 298..331 CDD:238011
EGF_CA 338..373 CDD:238011
EGF_CA 413..456 CDD:238011
EGF_CA 457..490 CDD:238011
EGF_CA 497..>529 CDD:214542
EGF_CA 580..>612 CDD:214542
EGF_3 676..702 CDD:289699
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395 54/248 (22%)
DUF4758 4275..4448 CDD:292572 212/1083 (20%)
DUF4758 4377..4574 CDD:292572 31/129 (24%)
DUF4758 4581..4754 CDD:292572 36/198 (18%)
DUF4758 4683..4847 CDD:292572 40/184 (22%)
DUF4758 4785..4964 CDD:292572 34/189 (18%)
DUF4696 4841..5385 CDD:292395 99/584 (17%)
DUF4758 4887..5098 CDD:292572 34/230 (15%)
DUF4758 5193..5371 CDD:292572 39/196 (20%)
DUF4758 5294..5487 CDD:292572 44/166 (27%)
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
Specc1XP_006246564.2 Mplasa_alph_rch <363..782 CDD:275316 81/520 (16%)
CH_CYTSB 946..1057 CDD:409106
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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