DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and Ltbp4

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:NP_001163807.1 Gene:Ltbp4 / 292734 RGDID:1307033 Length:1631 Species:Rattus norvegicus


Alignment Length:1703 Identity:436/1703 - (25%)
Similarity:559/1703 - (32%) Gaps:658/1703 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 DGTQD------CFLGADELSKELKCTNDCDKDGTKC--------THGACLNGV--------CH-C 116
            ||..|      ||       :||:        |::|        |...|..|.        || |
  Rat   278 DGYSDASGFGYCF-------RELR--------GSECASPLPGLRTQEVCCRGEGLAWGVHDCHPC 327

  Fly   117 NDGYGGCN-------------------CVDKDE----NECKQRPCDVFAHCTNTLGSFTCTCFPG 158
            .:..|..|                   |||.||    ..|:.      ..|.||.|.:||.|..|
  Rat   328 AEHLGNSNRVSGPNGLCPTGFERVNGSCVDVDECATGGRCQH------GECANTRGGYTCVCPDG 386

  Fly   159 YRGNGFHCEDIDECQDPAIAARCVENAE--C--------CNLP-----AHFLCKCKD-------- 200
            :.        :|..:...|:...:..|:  |        |:||     ...:|.|..        
  Rat   387 FL--------LDSSRSSCISQHVISEAKGPCYRVLQDGGCSLPILRNITKQICCCSRVGKAWGRG 443

  Fly   201 -------GYEGDGEVL---------CTDVDECRNPENCGPNALCTNTP--GNYTCSCPDGYV--- 244
                   |.||..|:.         .:|:.....|.|..|..:..|.|  ...|...|.|::   
  Rat   444 CQLCPPYGSEGFREICPAGPGYHYSASDLRYNTRPLNPDPPRVTFNQPRAPPVTLRPPTGFLPTR 508

  Fly   245 --------GNNP--------------------------YREGCQDVDECS-YPNVCGPGAICTNL 274
                    |..|                          ..|.......|. .|.|||||. |.:.
  Rat   509 RPEPRPDPGPQPELRPRPEPQPRPEFPLPSIPAWTGPEIPESGTSSSMCQRNPQVCGPGR-CVSR 572

  Fly   275 EGSYRCDCPPGYDGDGRSESGCVDQDECAR--TPC--GRNADCLNTDGSFRCLCPDGYSGDP-MN 334
            .|.|.|.|.||: ..|...:.|:|.|||.|  |||  ||   |.||.|||||:|..|:...| ..
  Rat   573 PGGYTCACDPGF-RLGPQGTRCIDVDECRRVPTPCAPGR---CENTPGSFRCVCGTGFRAGPRAT 633

  Fly   335 GCEDVDEC-ATNNPCGLGAECVNLGGSFQCRCPSGFVLEHDPHADQLPQPLNTQQLGYGPGATDI 398
            .|.||||| ....||..| .|.|..|||.|.||:|:  :..||                      
  Rat   634 ECLDVDECRRVPPPCDRG-RCENTPGSFLCVCPAGY--QAAPH---------------------- 673

  Fly   399 APYQRTSGAGLACLDIDECNQPDGVAKCGTNAKCINFPGSYRCLCPSGFQGQGYLHC-ENINEC- 461
                     |.:|.|:|||.|..|:  ||..| |.|.|||:||:||:||.|..   | |:::|| 
  Rat   674 ---------GASCQDVDECTQSPGL--CGRGA-CENLPGSFRCVCPAGFLGSA---CEEDVDECA 723

  Fly   462 -QDNPCGENAICTDTVGSFVCTCKPDY-TGDPFRGCVDIDECTALDKPCGQHAVCENTVPGYNCK 524
             |..|||... |.:|:|||.|.|...: :..|...|.|:|||.....||. :..||||...:.|.
  Rat   724 QQPPPCGPGR-CDNTLGSFHCACPAGFRSRGPGAPCQDVDECARSPSPCA-YGRCENTEGSFKCV 786

  Fly   525 CPQGYDGKPDPKVA---CEQVDVNILCSSNFDCTNNAECIEN----QC-FCLDGFEPIGSSCVDI 581
            ||.|:    .|..|   ||.||.   |.::..|... ||:.:    || .|..|:......|.|:
  Rat   787 CPTGF----QPNAAGSECEDVDE---CENHLACPGQ-ECVNSPGSFQCRACPVGYHLHRGRCTDV 843

  Fly   582 DECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVR-------CGAHAYCKPD 639
            |||.: ...||.|.||.|..||:.|.|..||.....|..   ||.|:.       |..|..|...
  Rat   844 DECNS-GTPCGLHGQCTNAQGSFHCSCSTGYRAPSGRPG---PCADINECLEGDFCFPHGECLNT 904

  Fly   640 QNEAYCVCEDGWTYNPSDVAAGCVDIDEC---DVMHGPFGSCGQNATCTNSAGGFTCACPPGFSG 701
            .....|.|..|  |.|....|.|:|:|||   |:       | |:..|||:.|.|.|.||||...
  Rat   905 DGSFTCTCAPG--YRPGPRGASCLDVDECSEEDL-------C-QSGICTNTDGSFECICPPGHRA 959

  Fly   702 DPH-SKCVDVDECR-TGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSVRCVPIVSCSANEDC 764
            .|. :.|:|:|||| .|.:.||: ..|.|.| |.|.|      :.|.||.....|..:|...::|
  Rat   960 GPDLASCLDIDECRERGPALCGS-QRCENSP-GSYRC------VRDCDPGYHPGPEGTCDDVDEC 1016

  Fly   765 P--GNSICDATKRCLCPEPNIGNDCRHPCEALNCGAHAQCMLANGQAQCLCAPGYTGNSALAGGC 827
            .  |::||.|.:                ||  |.....:|..|       |.|||  .....|||
  Rat  1017 REYGSAICGAQR----------------CE--NTPGSYRCTPA-------CDPGY--QPTPGGGC 1054

  Fly   828 NDIDECRANP-CAEKAICSNTAGGYLCQCPGGSSGDPYREGCITSKTVGCSDANPCATGETCVQD 891
            .|:||||... |...|:|.|..|.:                                        
  Rat  1055 QDVDECRNRSFCGAHAMCQNLPGSF---------------------------------------- 1079

  Fly   892 SYTGNSVCICRQGYERNSENGQCQDVDECSVQRGKPACGLNALCKNLPGSYECRCP--------- 947
                  .|:|.||||...:...|.||:||...:|  .|| :|||:|:.||:.|.||         
  Rat  1080 ------QCVCDQGYEGARDGRHCVDVNECETLQG--VCG-SALCENVEGSFLCVCPTSPEEFDPM 1135

  Fly   948 --------------------------------------------QGHNGNPFIMC-------EIC 961
                                                        ||...:....|       :.|
  Rat  1136 TGRCVPPRTPAGTFPGSQPQAPASPSLPARPPAPPPPRRPSPPRQGPVSSGRRECYFDTAAPDAC 1200

  Fly   962 NT--------PECQCQSPYKLVGNSCVLSGCSSGQACPSGAECISIAGGVSYCACPKGYQTQPDG 1018
            :.        .||.|     .||.... |||.. |.|| |.|   .|...|.|...:||.. |.|
  Rat  1201 DNILARNVTWQECCC-----TVGEGWG-SGCRI-QQCP-GTE---TAEYQSLCPHGRGYLV-PSG 1253

  Fly  1019 SCV---DVDECEERGAQLCAFGAQCVNKPGSYSCHCPEGYQGDAYNGLCALAQRKCAADRECAAN 1080
            ...   |||||:....|:|..|. |||....|||:|..|:...|:.                   
  Rat  1254 DLSARRDVDECQLFQDQVCKSGV-CVNTAPGYSCYCNNGFYYHAHR------------------- 1298

  Fly  1081 EKCIQPGECVCPPPYFLDPQDNNKCKSPCERFPCGINAKCTPSDPPQCMCEAGFKGDPLLGCTDE 1145
                                                                       |.|.|.
  Rat  1299 -----------------------------------------------------------LECVDN 1304

  Fly  1146 DECS-HLPCAYGAYCVNKKGGYQCVCPKDYTGDPYKSGCIFESGTPKSKCLSNDDCASNLACLEG 1209
            |||: ..|...|..|||..|.|.|.|......|..:..|:      .::..|.||   ||    |
  Rat  1305 DECADEEPACEGGRCVNTVGSYHCTCEPPLVLDGSRRRCV------SNESQSLDD---NL----G 1356

  Fly  1210 SC---VSPCSSLLCGSNAYCETEQHAGWCRCRVGYVKNGDGDC-VSQCQDVICGDG--ALC---I 1265
            .|   |.|  .|:|...   ..::.|.:..|...|.:....|| :...||   .|.  |||   .
  Rat  1357 VCWQEVGP--DLVCSRP---RLDRQATYTECCCLYGEAWGMDCALCPAQD---SDDFEALCNVLR 1413

  Fly  1266 PTSEGPTCKCPQGQLGNPFPGGSCSTDQCSAARPCGERQICINGRCKERCEGVVCGIGATCDRNN 1330
            |.:.||           |.||                                  |.|...:  .
  Rat  1414 PPAYGP-----------PRPG----------------------------------GFGLPYE--Y 1431

  Fly  1331 GKCICEP--NFVGNPDLICMP--PIEQAKCSPGCGENAHCEYG---------------LGQSRCA 1376
            |..|..|  :....|||...|  |.:.....||........||               .|::...
  Rat  1432 GPDIGPPYQSLPYGPDLYPPPVLPYDPYPPPPGPFARREAPYGAPPFEMPDFEDDGDPYGETEAP 1496

  Fly  1377 CNP------------------------------GTFGNPYEGCGAQSKNVCQPNSCGPNAECRAV 1411
            ..|                              |....||||..|:        .||....|.  
  Rat  1497 DPPSRGTGWPYRSRDTRGSFPEPEESSERGSYTGALSEPYEGLEAE--------ECGILDGCA-- 1551

  Fly  1412 GNHISCL-CPQGFSGNPYIG---------CQDVDEC----ANKPCGLNAACLNRAGGFECLCLSG 1462
              |..|: .|:||:.:.:.|         |.|::||    |..|..:||.|:|..|.|.|:|..|
  Rat  1552 --HGRCVRVPEGFTCDCFDGYRLDITRMSCVDINECDEAEATSPLCVNARCVNTDGSFRCICRPG 1614

  Fly  1463 HA--GNPYSSCQP 1473
            .|  ..|: .|.|
  Rat  1615 FAPTHQPH-HCAP 1626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 8/28 (29%)
EGF_CA 212..247 CDD:238011 10/47 (21%)
EGF_CA 255..>286 CDD:214542 13/31 (42%)
EGF_CA 298..331 CDD:238011 20/36 (56%)
EGF_CA 338..373 CDD:238011 17/35 (49%)
EGF_CA 413..456 CDD:238011 22/43 (51%)
EGF_CA 457..490 CDD:238011 13/35 (37%)
EGF_CA 497..>529 CDD:214542 13/31 (42%)
EGF_CA 580..>612 CDD:214542 14/31 (45%)
EGF_3 676..702 CDD:289699 12/25 (48%)
EGF_CA 1022..1056 CDD:214542 16/33 (48%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
Ltbp4NP_001163807.1 EGF_CA 357..>387 CDD:214542 11/35 (31%)
TB 418..453 CDD:279073 6/34 (18%)
cEGF 575..598 CDD:289433 8/23 (35%)
EGF_CA 595..631 CDD:214542 20/38 (53%)
EGF_CA 637..678 CDD:214542 20/74 (27%)
EGF_CA 679..716 CDD:238011 21/42 (50%)
EGF_CA 718..752 CDD:214542 13/34 (38%)
EGF_CA 760..800 CDD:284955 16/44 (36%)
EGF_CA 842..874 CDD:238011 15/32 (47%)
EGF_CA 885..921 CDD:214542 9/37 (24%)
EGF_CA 927..962 CDD:214542 17/42 (40%)
EGF_CA 968..1006 CDD:214542 17/45 (38%)
EGF_CA 1056..1097 CDD:214542 16/86 (19%)
TB 1200..1237 CDD:279073 14/47 (30%)
EGF_CA 1303..>1332 CDD:238011 13/28 (46%)
TB 1368..1404 CDD:279073 8/41 (20%)
EGF_CA 1581..>1615 CDD:214542 13/33 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11363
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45515
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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