DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and Nefh

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:NP_036739.2 Gene:Nefh / 24587 RGDID:3159 Length:1064 Species:Rattus norvegicus


Alignment Length:1135 Identity:214/1135 - (18%)
Similarity:377/1135 - (33%) Gaps:361/1135 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  4470 FITRPHSEKTTESTRDVPTTRPFEASTPSSA--SLETTVPSVTLETTTNVPIGSTGGQVTEQTTS 4532
            ::.|.|.|:..|....:......:|...:.|  :|:..|.|...|....:.     |...:.|..
  Rat   229 YLRRHHQEEVGELLGQIQGCGAAQAQAQAEARDALKCDVTSALREIRAQLE-----GHTVQSTLQ 288

  Fly  4533 SPSEVRTTIRVEESTLPSRSADRTTLSESPETPTTLPSDFTIRPHSEQTTESTRDVPTTRPFEAS 4597
            |....|..:            ||  |||:.:..|.     .:|...|:.||..|.:      :|.
  Rat   289 SEEWFRVRL------------DR--LSEAAKVNTD-----AMRSAQEEITEYRRQL------QAR 328

  Fly  4598 TPSPASLETTVPSVTSETTTNVPIGSTGGQVTGQTTAPPSEFRTTIRVEESTLPSRSTDRTTPSE 4662
            |....:|::|..|:..:.:          ::..:.....:.::..|:..::.|      |.|..|
  Rat   329 TTELEALKSTKESLERQRS----------ELEDRHQVDMASYQDAIQQLDNEL------RNTKWE 377

  Fly  4663 SPETPTILPSDSTTRTYSDQTTESTRDVPTTRPFEAST---------------PSPASLETTVPS 4712
            ..         :..|.|.|     ..:|......|.:.               |||.||...:|.
  Rat   378 MA---------AQLREYQD-----LLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFSLTEGLPK 428

  Fly  4713 VTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSADRTTPSESPETPTTLPSDFI 4777
            :. ..:|::.:.|     .|:........:.|:.|||.|...:..:..|..|..|.         
  Rat   429 IP-SMSTHIKVKS-----EEKIKVVEKSEKETVIVEEQTEEIQVTEEVTEEEDKEA--------- 478

  Fly  4778 TRPHSEKTTESTRDVPTTRP--FEASTPSSASLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSP 4840
            .....|:..|...:..||.|  .||::|              |..|..|:        ::...||
  Rat   479 QGEEEEEAEEGGEEAATTSPPAEEAASP--------------EKETKSPV--------KEEAKSP 521

  Fly  4841 SEVRTTIRVEESTLPSRSADRTTPSESPETPTTLPSDFITRPHSEKTTESTRDVPTTRPFEASTP 4905
            :|.::            .|:..:|:|: ::|..:.|..:.:..:|  .:|..:|.:  |.||.:|
  Rat   522 AEAKS------------PAEAKSPAEA-KSPAEVKSPAVAKSPAE--VKSPAEVKS--PAEAKSP 569

  Fly  4906 SSASLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSTDRTTPSESP 4970
            :.|.....|.|       ...:.|.|...:.....||:||::.:..:            :|:|: 
  Rat   570 AEAKSPAEVKS-------PATVKSPGEAKSPAEAKSPAEVKSPVEAK------------SPAEA- 614

  Fly  4971 ETPTTLPSDFTTRPHSEQTTESTRDVPTT--RPFEASTPSPASLETTVPSVTLETTTNVPIGSTG 5033
            ::|.::.|....:..:|..:.:....|.|  .|.||.  |||.:::.|                 
  Rat   615 KSPASVKSPGEAKSPAEAKSPAEVKSPATVKSPVEAK--SPAEVKSPV----------------- 660

  Fly  5034 GQVTEQTTSSPSEVRTTIRVEESTLPSRSADRTTPSESPETPTTLPSDFITRTYSDQTTESTRDV 5098
                  |..||:|.::.:.|:.      .|...:|||: ::|....|          ..|:...|
  Rat   661 ------TVKSPAEAKSPVEVKS------PASVKSPSEA-KSPAGAKS----------PAEAKSPV 702

  Fly  5099 PTTRPFEASTPSPASLETTVPSVTSETTTNVPIGSTGGQVTGQTTAPPSEFRTTIRVEESTLPSR 5163
            ....|.||.:|:.|.                               ||:|.::....:.......
  Rat   703 VAKSPAEAKSPAEAK-------------------------------PPAEAKSPAEAKSPAEAKS 736

  Fly  5164 STDRTTPSESPETPTTLPSDFTTRPHSDQTTESTRDVPTTRPFEASTP----SPASLETTVPSVT 5224
            ..:..:|:|: ::|..:.|....:....:..:|..        ||.:|    ||...|...|:  
  Rat   737 PAEAKSPAEA-KSPVEVKSPEKAKSPVKEGAKSLA--------EAKSPEKAKSPVKEEIKPPA-- 790

  Fly  5225 LETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSADRTTPSESPETPTLPSDFTTRP 5289
                               ...||.:.::.:: ||:..|.::  :|...:|||..|        |
  Rat   791 -------------------EVKSPEKAKSPMK-EEAKSPEKA--KTLDVKSPEAKT--------P 825

  Fly  5290 HSEQTTESTRDVPATRPFEASTP----SPASLETTVPSVTSEATTNVPIGSTGGQVTEQTTSSPS 5350
            ..|:         |.||.:..:|    |||..|...|.  .|.|.           ||:......
  Rat   826 AKEE---------AKRPADIRSPEQVKSPAKEEAKSPE--KEETR-----------TEKVAPKKE 868

  Fly  5351 EVRTTI----------RVEESTLPSRSTDRTSPSESPETPTTLPSDFTTRPHSDQTTECTRDVPT 5405
            ||::.:          :|||...|:........|:..|.|..     ..:|.:::....| :.|.
  Rat   869 EVKSPVEEVKAKEPPKKVEEEKTPATPKTEVKESKKDEAPKE-----AQKPKAEEKEPLT-EKPK 927

  Fly  5406 TRPFEASTPSSASLETTVPSVTLETTTNVPIGSTGGQVTEQTTSSPSEVRTTIRVEESTLPSRSA 5470
            ..|.||....:...:...|    |..|...:|     |.|:  :.|.|.....:.:|   ||:.:
  Rat   928 DSPGEAKKEEAKEKKAAAP----EEETPAKLG-----VKEE--AKPKEKAEDAKAKE---PSKPS 978

  Fly  5471 DRTTPSESPETPTLPSDFTTRPHSEQTTESTRDVPTTRP-FEAST----------PSSASLETTV 5524
            ::..|.:. |.|..|....|:  .|:||||.:  |..:| .||..          ||....|...
  Rat   979 EKEKPKKE-EVPAAPEKKDTK--EEKTTESKK--PEEKPKMEAKAKEEDKGLPQEPSKPKTEKAE 1038

  Fly  5525 PSVTLETTTNVPIGSTGGQVTEQTTSSPSE 5554
            .|.:                |:|..|.|||
  Rat  1039 KSSS----------------TDQKDSQPSE 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699
EGF_CA 212..247 CDD:238011
EGF_CA 255..>286 CDD:214542
EGF_CA 298..331 CDD:238011
EGF_CA 338..373 CDD:238011
EGF_CA 413..456 CDD:238011
EGF_CA 457..490 CDD:238011
EGF_CA 497..>529 CDD:214542
EGF_CA 580..>612 CDD:214542
EGF_3 676..702 CDD:289699
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395 35/209 (17%)
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572 20/105 (19%)
DUF4758 4581..4754 CDD:292572 32/187 (17%)
DUF4758 4683..4847 CDD:292572 33/180 (18%)
DUF4758 4785..4964 CDD:292572 34/180 (19%)
DUF4696 4841..5385 CDD:292395 103/563 (18%)
DUF4758 4887..5098 CDD:292572 41/212 (19%)
DUF4758 5193..5371 CDD:292572 39/195 (20%)
DUF4758 5294..5487 CDD:292572 43/206 (21%)
DUF4758 5445..5650 CDD:292572 30/121 (25%)
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
NefhNP_036739.2 Filament 96..412 CDD:278467 40/242 (17%)
DUF3275 <500..>571 CDD:288521 21/109 (19%)
DUF1388 588..614 CDD:284540 6/37 (16%)
DUF966 <664..>807 CDD:283735 36/221 (16%)
DUF1388 726..752 CDD:284540 3/26 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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