DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and lgx-1

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:NP_001360720.1 Gene:lgx-1 / 180825 WormBaseID:WBGene00002983 Length:1754 Species:Caenorhabditis elegans


Alignment Length:1587 Identity:327/1587 - (20%)
Similarity:460/1587 - (28%) Gaps:636/1587 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   467 GENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCG--QHAVCENTV--PGYNCKCPQ 527
            |.|..|...:...: |..||.....|..|..:...|     .|  :..:|.|.:  ...|..|  
 Worm    20 GINVPCNKELDGLL-TADPDGDERAFMSCQGVGVGT-----IGFWERKLCPNNMVFDFINQHC-- 76

  Fly   528 GYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIEN--------QCFCLDGFEPIGS-------S 577
                |...|.|.:|.:::|...:| .|.|...||..        :|.|     |.|:       |
 Worm    77 ----KEQKKKARKQQNLSIAILNN-SCANGETCIGGSVCDLDTLRCMC-----PYGTTPKLDTLS 131

  Fly   578 CVDIDECRTHAEVCGPHAQCLNT-PGSYGCECEA--GYV--GSPPRMACKQPCEDVR----CGAH 633
            |.........|.|.|| ||..|: .|..|.....  |::  |.|..:...||..:.:    .|.:
 Worm   132 CESSQPPFVSATVDGP-AQFFNSFSGGNGNRNNQNNGFMPFGQPSELPDFQPNNNFKYGNNFGQN 195

  Fly   634 AYCKPDQNEAYCVCEDGWTYNPSDVAAGCVDIDECDVMHGPFGSCGQNATCTNSAGGFTCACPPG 698
            .....:.|:........|..|.::      :.:.......|..:.|..||.|           |.
 Worm   196 QNSNNNNNDFNWNPNFNWNNNQNN------NNNNAPNKQAPMNNAGVGATTT-----------PD 243

  Fly   699 FS---GDPHSKCVDVDECRTGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSVR--CVPIVSC 758
            |:   .:|:.:.|    .....::.|...:..:|....:....|   :.:..|.|.  .:|..||
 Worm   244 FNPFQPNPNQQFV----FNFNKNQGGQNNQNNHVNNNNHNQNIP---VLESKPKVATLAIPGASC 301

  Fly   759 SANEDCPGNSICD-ATKRCLCPEPNIGNDCRHPCEALNCGAHAQCMLANGQAQCLCAPGYTGNSA 822
            .:||.|.|.|||. ....||||    |:     .||    ...:|:|   .|....:....|..|
 Worm   302 KSNEICVGGSICTLPIGICLCP----GD-----LEA----REGECVL---PAASTISVQKVGIGA 350

  Fly   823 LAGGCNDIDEC-RANPCAEKAICSNTAGGYLCQCPGGSSGDPYREG-CI---TSKTVGCSDANPC 882
            |   |:|:.|| ..:.|        ..|...|..|     ....|| |:   ..|.||..:.  |
 Worm   351 L---CSDLAECDHGSTC--------VMGRCTCVSP-----LVQHEGKCVLRQQQKIVGPGEL--C 397

  Fly   883 ATGETCVQDSYTGNSVCICRQGYERNSENGQCQDV------------------------------ 917
            .:||||.:.|...:.:.:|....:.:..||:|..|                              
 Worm   398 DSGETCGKGSICDSVIPVCVCPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQ 462

  Fly   918 ---------------------------------------------------------------DE 919
                                                                           ::
 Worm   463 TRPPQLPPVQITQPPIQTPVQPIFFQTTRPPMPTYATTPATTQFIPKQIYTTPPQMPKNSIKINQ 527

  Fly   920 CSVQRGKPA-----CGLNALCKNLPGSYECRCPQGHNGNPFIMCEICNTPECQCQSPYKLVGNSC 979
            ..:...|.|     |.||..|  :.|:|   |    |||       .|.|.|||.|.:..:...|
 Worm   528 MKIGGSKQAGVGVRCSLNTDC--MIGAY---C----NGN-------TNPPSCQCLSTHVNIEGRC 576

  Fly   980 --VL----SGCSSGQAC---PSGAECISIAGGVSYCACPKGYQ--------------TQPDGSCV 1021
              |:    .||.|...|   .||..||.     ..|.||:|.:              :.|.|||.
 Worm   577 EKVIYPGQVGCRSDLQCHAAHSGTHCID-----RICVCPEGQRAVDQTCVSASEPVTSPPGGSCS 636

  Fly  1022 DVDECEERGAQLCAFG-------AQCVN---------KPG----------------SYSCHCPEG 1054
            ::.||  .|..:|..|       :..||         ||.                ..|.|.|:.
 Worm   637 NLREC--TGGSVCREGWCICPDPSMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVHVPQV 699

  Fly  1055 YQGDAY----------NGLCALAQRKCAADRECAANEKCIQPGECVCPPPYFLDPQDNNKCKSPC 1109
            ....|.          .|...:...:|.....|.....||: |.|:||    ...|.:|..:  |
 Worm   700 TITKAQPFITEAPLAPQGKKIVPGGRCGPIDVCVGGSNCIE-GFCLCP----AGQQPSNSGR--C 757

  Fly  1110 ERFPCGINAKCTPSD------------PPQCMCEAGFKGDPLLGC-------------------- 1142
            |:|.........||.            ||.......|....||..                    
 Worm   758 EKFTTTSRQTTLPSTTTTQGTTTTTTAPPPTTSVFSFTIADLLSTRRQPAFIEIPTHVPLTTTAI 822

  Fly  1143 -TDEDECS--HLPCAYGAYCVNKKGGYQCVCPKDYTGDPYKSGCI---------------FESGT 1189
             || |||:  .|.|.....|.||    .|.||:.|.  .:..||:               .|:.|
 Worm   823 QTD-DECTAIGLICKGNTVCRNK----SCQCPETYV--LHHDGCVSPEEAARRKARGKARHEATT 880

  Fly  1190 ------PKSKCLSNDDCASNLAC---------------LEGSCVSP----------C-SSLLCGS 1222
                  |...|.....|....||               .:|.||:|          | ::.:|..
 Worm   881 ARLYSKPGESCTQGQTCVGGSACSFRKLCECPQDKSEISQGQCVTPRKLEVVPGASCNANTVCTK 945

  Fly  1223 NAYCETEQHAGWCRCRVGYVKNGDGDCVSQCQDVICGDGALCIPTSEGPTCKCPQGQLGNPFPGG 1287
            .:.||    :|.|||:.||:. ..|:||:             :|.|..|..:.            
 Worm   946 GSTCE----SGLCRCQPGYIA-VSGNCVA-------------LPMSTTPKMRV------------ 980

  Fly  1288 SCSTDQCSAARPCGERQICINGRCKERCEGVVCGIGATCDRNNGKCICEP-NFVGNPDLICMPPI 1351
                    .|:|.   :.|.||   |.|||     |:.||.:.|.|:|.| ..|.|  :.||||.
 Worm   981 --------IAKPL---ESCENG---ETCEG-----GSNCDYDTGICMCPPGQIVFN--VQCMPPP 1024

  Fly  1352 EQ----------AKCSP----------------GCGENAHCEYGLGQSRCACNPGTFGN-----P 1385
            .|          .|.:|                .||||..|..|    :|.|.||...|     |
 Worm  1025 TQPQITTRVTTPVKAAPVVTPKPIHSTDCEIDANCGENKICVSG----KCKCKPGFVDNSGTCEP 1085

  Fly  1386 YEGCGAQSKNVCQ-----PNSCGPNAECRAVGNHIS--CLCPQGFSGNPYIGCQDVDECANKPCG 1443
            .||...:|....|     .:.|...|:|      |.  |.|..||...|...|:..|  ..|...
 Worm  1086 LEGIRGRSLRYGQACDRYQDKCINGAKC------IDKICKCAPGFLLAPNGWCEGFD--LAKAIE 1142

  Fly  1444 LNAACLNRAGGFEC---------------LCLSGHAGNPY------------------------- 1468
            :|...:......:.               ..:|....:|.                         
 Worm  1143 INKQSIGTTPPVKANRVIQTKMQQVYTTSSTISSTTTSPAPTQKPRIVPKDFPTPPSNIFGFPDR 1207

  Fly  1469 -------------SSCQPIESKFCQDANKCQCNERVECPEGYSCQKGQC------------KNLC 1508
                         |:|:||:  .|...:.| .|....|||.|..|.|||            ...|
 Worm  1208 RTTKIVPKVAAVGSACRPID--ICLGESVC-TNGFCHCPENYIRQNGQCISKECKHKVAKVGETC 1269

  Fly  1509 SQAS-CGPRAIC--DAGNCICPMGYI--------------GDPHDQVHGCSIRGQCGNDADCLH- 1555
            .... |...:||  |...|||...::              ..|.|.   ||:|.:|...|.|.. 
 Worm  1270 KNGEICAGGSICDYDRKRCICAAQHVAIRGICKQKSAPAFAAPGDT---CSMREKCTGGATCFEG 1331

  Fly  1556 ----------------------SEICFQLGKGL---------RKCVDACSKIQCG-PNALCVSED 1588
                                  |::.|..|.||         |:...||::.:|. ||..|....
 Worm  1332 MCTCDDHHFAEDGYCRPIEARSSKVQFVNGAGLRFSSMQVPNRQRAQACNEAECKLPNCFCTENG 1396

  Fly  1589 HRSSCICSDGFFGNPSNLQVGCQPERT 1615
            .|:           |.    |.:|:.|
 Worm  1397 RRA-----------PG----GLRPDET 1408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699
EGF_CA 212..247 CDD:238011
EGF_CA 255..>286 CDD:214542
EGF_CA 298..331 CDD:238011
EGF_CA 338..373 CDD:238011
EGF_CA 413..456 CDD:238011
EGF_CA 457..490 CDD:238011 6/22 (27%)
EGF_CA 497..>529 CDD:214542 6/35 (17%)
EGF_CA 580..>612 CDD:214542 9/34 (26%)
EGF_3 676..702 CDD:289699 6/28 (21%)
EGF_CA 1022..1056 CDD:214542 12/65 (18%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
lgx-1NP_001360720.1 EB 322..382 CDD:366756 21/91 (23%)
PHA02682 <388..>493 CDD:177464 14/106 (13%)
EB 565..620 CDD:366756 16/59 (27%)
EB 609..666 CDD:366756 14/58 (24%)
EB <718..757 CDD:366756 10/45 (22%)
EB 911..967 CDD:366756 15/60 (25%)
EB 956..1020 CDD:366756 27/110 (25%)
EB 1009..1083 CDD:366756 22/79 (28%)
EB 1072..1124 CDD:366756 15/57 (26%)
EB <1215..1253 CDD:366756 13/40 (33%)
EB 1242..1301 CDD:366756 16/58 (28%)
EB 1290..1346 CDD:366756 9/58 (16%)
CE4_CDA_like_1 1409..1684 CDD:200596 327/1587 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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