DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpy and lin-12

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:NP_499007.1 Gene:lin-12 / 176282 WormBaseID:WBGene00003001 Length:1429 Species:Caenorhabditis elegans


Alignment Length:924 Identity:235/924 - (25%)
Similarity:333/924 - (36%) Gaps:259/924 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 CGPNALCTNTPGN-----YTCSCPDGYVGNNPYREGCQDVDECSYPNVCGPGAICTNLEGSYR-- 279
            ||.|..|...|.|     |.|.|.:|:.|.  |.|...||.:|.....|       ..:..||  
 Worm    29 CGRNGHCHAGPVNGTQTSYWCRCDEGFGGE--YCEQQCDVSKCGADEKC-------VFDKDYRME 84

  Fly   280 ------CD----------CPPGYDGDGRSESGCVDQDECARTPCGRNADCLNTDGSFRCLCPDGY 328
                  ||          ||.||.||     .|..|..|..:.|.....|:......:|.||||:
 Worm    85 TCVCKDCDINGNSLLKPSCPSGYGGD-----DCKTQGWCYPSVCMNGGQCIGAGNRAKCACPDGF 144

  Fly   329 SGDPMNGCE-DVDECATN-NPCGLGAECVNLGGSFQCRCPSGFVLEHDPHADQLPQPLNTQQLGY 391
            .|:   .|| ||:||..| |.||..:.|:|..|::.|.||.||:    |     |..|.      
 Worm   145 KGE---RCELDVNECEENKNACGNRSTCMNTLGTYICVCPQGFL----P-----PDCLK------ 191

  Fly   392 GPGATDIAPYQRTSGAGLACLDIDECNQPDGVAK-CGTNAKCINFPGSYRCLCPSGFQGQGYLHC 455
             ||.|....:::.    :..|:| ..:.|||.:. |.....|..  .|.:|.||.|:.|......
 Worm   192 -PGNTSTVEFKQP----VCFLEI-SADHPDGRSMYCQNGGFCDK--ASSKCQCPPGYHGSTCELL 248

  Fly   456 ENINECQDNPCGENAICTDTVGSFVCTCKPDYTGDPFRGCVD-IDECTALDKPCGQHAVCENTVP 519
            |..:.|..||| .:.:|....|.|.|.|...|:|.   .|.: .|.|  ::..|...:.|.|.|.
 Worm   249 EKEDSCASNPC-SHGVCISFSGGFQCICDDGYSGS---YCQEGKDNC--VNNKCEAGSKCINGVN 307

  Fly   520 GYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIEN-------QCFCLDGFEPIGSS 577
            .|.|.||....|.     .||::|    ||:..|..|:..||::       :|.|..|:|  |..
 Worm   308 SYFCDCPPERTGP-----YCEKMD----CSAIPDICNHGTCIDSPLSEKAFECQCEPGYE--GIL 361

  Fly   578 C-VDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQP---CEDVRCGAHAYCKP 638
            | .|.:||.:. .:|..:..|:|.|||:.|:|..|:.|.    .|.:|   |:|..|        
 Worm   362 CEQDKNECLSE-NMCLNNGTCVNLPGSFRCDCARGFGGK----WCDEPLNMCQDFHC-------- 413

  Fly   639 DQNEAYCVCEDGWTYNPSDVAAGCVDIDECDVMHGPFGSCGQNATCTNSAGGFTC--ACPPGFSG 701
             :|:..|:       :.||              |.|.      ..|.|...|..|  .||.||.|
 Worm   414 -ENDGTCM-------HTSD--------------HSPV------CQCKNGFIGKRCEKECPIGFGG 450

  Fly   702 DPHSKCVDVDECRTGASKCGAGAECVNVPGGGYTCRCP----GNTIADPDPSVRCVPIVSCSANE 762
            ......:::..|.....||..|.:|::    |: |.||    ||               .|..|.
 Worm   451 VRCDLRLEIGICSRQGGKCFNGGKCLS----GF-CVCPPDFTGN---------------QCEVNR 495

  Fly   763 DCPGNSICDATKRCLCPEPNIGNDCRHPCEALNCGAHAQCMLANGQAQCLCAPGYTGNSALAGGC 827
            ....:|:.:.    ||    :.:.|.:....::..||.      |.| |:|..|:.|        
 Worm   496 KNGKSSLSEN----LC----LSDPCMNNATCIDVDAHI------GYA-CICKQGFEG-------- 537

  Fly   828 NDI-----DECRANPCAEKAICSNTAGGYLCQCPGGSSGDPYREGCITSKTVGCSDANPCATGET 887
             ||     |.|..|||:...:|......:.|.||.|.    |..||...|...|..:. |..|..
 Worm   538 -DICERHKDLCLENPCSNGGVCHQHRESFSCDCPPGF----YGNGCEQEKMFRCLKST-CQNGGV 596

  Fly   888 CVQDSYTGNSVCICRQGYERNSENGQCQDVDECSVQRGKPACGLNALCKNLPGSYECRCPQ-GHN 951
            |:.:...|.. |.|..|:    ...:|::....:....|.:. |.::|:      :.:|.: .::
 Worm   597 CINEEEKGRK-CECSYGF----SGARCEEKINLTGFTEKDSL-LRSVCE------KRKCSERAND 649

  Fly   952 GNPFIMCEI-CNTPECQCQSPYKLVGNSC-----VLSGCSSGQACPSGAECISIAGGVSYCACPK 1010
            ||    |:. ||...|      |..|..|     ..|.|..|..|..     ..|.||...||  
 Worm   650 GN----CDADCNYAAC------KFDGGDCSGKREPFSKCRYGNMCAD-----FFANGVCNQAC-- 697

  Fly  1011 GYQTQPDGSCVDVDECEERGAQLCAFGAQCVNKPGSYSCHCPEGYQGDAYNGLCALAQRKCAADR 1075
                       :.:||...|........:|   |.....||...:.    ||:|         |.
 Worm   698 -----------NNEECLYDGMDCLPAVVRC---PVKIREHCASRFA----NGIC---------DP 735

  Fly  1076 ECAANEKCIQPGEC 1089
            ||..|......|:|
 Worm   736 ECNTNGCGFDGGDC 749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699
EGF_CA 212..247 CDD:238011 11/29 (38%)
EGF_CA 255..>286 CDD:214542 10/48 (21%)
EGF_CA 298..331 CDD:238011 9/32 (28%)
EGF_CA 338..373 CDD:238011 16/35 (46%)
EGF_CA 413..456 CDD:238011 12/43 (28%)
EGF_CA 457..490 CDD:238011 10/32 (31%)
EGF_CA 497..>529 CDD:214542 10/32 (31%)
EGF_CA 580..>612 CDD:214542 11/31 (35%)
EGF_3 676..702 CDD:289699 8/27 (30%)
EGF_CA 1022..1056 CDD:214542 7/33 (21%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
lin-12NP_499007.1 EGF_CA 152..189 CDD:238011 18/45 (40%)
EGF_CA 252..285 CDD:238011 11/36 (31%)
EGF_CA 293..323 CDD:238011 9/34 (26%)
EGF_CA 365..401 CDD:238011 13/40 (33%)
EGF_CA 505..541 CDD:238011 13/59 (22%)
EGF_CA 545..579 CDD:238011 12/37 (32%)
NL 635..668 CDD:197463 10/48 (21%)
Notch 675..709 CDD:278494 12/51 (24%)
Notch 722..750 CDD:278494 11/41 (27%)
NOD 754..804 CDD:284282
NODP 842..898 CDD:284987
ANK 1046..1186 CDD:238125
ANK repeat 1052..1091 CDD:293786
Ank_4 1053..1113 CDD:290365
ANK repeat 1093..1124 CDD:293786
Ank_4 1094..1147 CDD:290365
ANK repeat 1126..1160 CDD:293786
ANK 1160..1292 CDD:238125
ANK repeat 1162..1201 CDD:293786
Ank_2 1167..1271 CDD:289560
ANK repeat 1203..1238 CDD:293786
ANK repeat 1240..1271 CDD:293786
Pap_E4 1306..>1373 CDD:280813
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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