DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and Ltbp3

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_006531731.1 Gene:Ltbp3 / 16998 MGIID:1101355 Length:1300 Species:Mus musculus


Alignment Length:1030 Identity:288/1030 - (27%)
Similarity:382/1030 - (37%) Gaps:354/1030 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 TNDCDKDGTKCTHGACLNG----VCHCNDGYGG----CNCVDKDENECKQRPCDV-FAHCTNTLG 149
            |::|..:...|.||.|:.|    .||||.||..    ..||  |.|||:..||.. ...|.||.|
Mouse   572 TDECRLNQNICGHGQCVPGPSDYSCHCNAGYRSHPQHRYCV--DVNECEAEPCGPGKGICMNTGG 634

  Fly   150 SFTCTCFPGYR----GNGFHCEDIDECQDPAIAARCVENAECCNLPAHFLCKCKDGY--EGDGEV 208
            |:.|.|..|||    ..|..|.|::||..|.:   |.:...|.|.|.|:.|.|..||  :.....
Mouse   635 SYNCHCNRGYRLHVGAGGRSCVDLNECTKPHL---CGDGGFCINFPGHYKCNCYPGYRLKASRPP 696

  Fly   209 LCTDVDECRNPENCGPNALCTNTPGNYTC-SCPDGYVGNNPYREGCQDVDECSYPNVCGPGAICT 272
            :|.|:||||:|..| |:..|.|.||::.| :|..||  .:.....|:||:|||....|.|| .|.
Mouse   697 ICEDIDECRDPSTC-PDGKCENKPGSFKCIACQPGY--RSQGGGACRDVNECSEGTPCSPG-WCE 757

  Fly   273 NLEGSYRCDCPPGYD--GDGRSESGCVDQDECARTPCGRNADCLNTDGSFRCLCPDGY--SGDPM 333
            ||.|||||.|..||:  .||.|   |:|.|||......::..|.||.|||:|.|..||  |.| .
Mouse   758 NLPGSYRCTCAQGYEPAQDGLS---CIDVDECEAGKVCQDGICTNTPGSFQCQCLSGYHLSRD-R 818

  Fly   334 NGCEDVDECATNNPCGLGAECVNLGGSFQCRCPSGFVLEHDPHADQLPQPLNTQQLGYGPGATDI 398
            :.|||:|||.....| :|.:|:|..||::|.||.|                              
Mouse   819 SRCEDIDECDFPAAC-IGGDCINTNGSYRCLCPQG------------------------------ 852

  Fly   399 APYQRTSGAGLACLDIDECNQPDGVAKCGTNAKCINFPGSYRCLCPSGFQ-GQGYLHCENI---- 458
               .|..| |..|.|||||:|..|:  |..:..|.|..|||.|:|..||. .|....||.:    
Mouse   853 ---HRLVG-GRKCQDIDECSQDPGL--CLPHGACENLQGSYVCVCDEGFTLTQDQHGCEEVEQPH 911

  Fly   459 --NECQDNPCGENAICTDTVGSFV----CTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCENT 517
              .||..| ..:...|...:.:.|    |.|.        .|....|.|...  ||..::..|  
Mouse   912 HKKECYLN-FDDTVFCDSVLATNVTQQECCCS--------LGAGWGDHCEIY--PCPVYSSAE-- 963

  Fly   518 VPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGSSCVDID 582
               ::..||   |||...:      |.||:   |:....:.                     |||
Mouse   964 ---FHSLCP---DGKGYTQ------DNNIV---NYGIPAHR---------------------DID 992

  Fly   583 ECRTH-AEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGAHAYCKPDQNEAYCV 646
            ||... ||:| ...:|:||...|.|.|:.|:                                  
Mouse   993 ECILFGAEIC-KEGKCVNTQPGYECYCKQGF---------------------------------- 1022

  Fly   647 CEDGWTYNPSDVAAGCVDIDEC-DVMHGPFGSCGQNATCTNSAGGFTCAC-PPGFSGDPHSKC-- 707
                  |...::.. |||:||| |.     .:| :|..|.|:.||:.||| ||........:|  
Mouse  1023 ------YYDGNLLE-CVDVDECLDE-----SNC-RNGVCENTRGGYRCACTPPAEYSPAQRQCLS 1074

  Fly   708 ---VDVDECRTGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSVRCVPIVSCSANEDC--PGN 767
               :|||||:..|: |..| .|||:| |.|.|.|  :...:|.||.|           ||  |.:
Mouse  1075 PEEMDVDECQDPAA-CRPG-RCVNLP-GSYRCEC--HPPWEPGPSGR-----------DCQLPES 1123

  Fly   768 SICDATKRCLCPEPNIGNDCRHPCEALNCGAHAQCMLANGQAQCLCAPGYTGNSALAGGCNDIDE 832
            ....|.:|            |..|.... |....||                 ..|||.....|:
Mouse  1124 QAEHAPER------------REVCWGQR-GEDGMCM-----------------GPLAGPALTFDD 1158

  Fly   833 CRANPCAEKAICSNTAGGYLCQC----PGGSSGDPYREGCITSKTVGCS--DANPCATGETCVQD 891
            |          |.....|:..||    |.|:...     |.||::...|  |.:|...|::    
Mouse  1159 C----------CCRQGRGWGTQCRPCPPRGTGSQ-----CPTSQSESNSFWDTSPLLLGKS---- 1204

  Fly   892 SYTGNSVCICRQGYERNSENGQCQDVDECSVQRGKPACGLNALCKNLPGSYECRCPQGHNGNPFI 956
                          .|:.::.: :|.|                        ||||..|       
Mouse  1205 --------------PRDEDSSE-EDSD------------------------ECRCVSG------- 1223

  Fly   957 MCEICNTPECQCQSPYKLVGNSCVLSGCSSGQACPSGAECISIAGGVSYCACPKGYQTQPDGS-- 1019
                                                  .|:...|| :.|.||.|:|.  |.|  
Mouse  1224 --------------------------------------RCVPRPGG-AVCECPGGFQL--DASRA 1247

  Fly  1020 -CVDVDECEE---RGAQLCAFGAQCVNKPGSYSCHCPEGYQGDAYNGLCALAQRK 1070
             |||:|||.|   ||. ||. ..:|||..||:.|.|..|:.....:|.|...:|:
Mouse  1248 RCVDIDECRELNQRGL-LCK-SERCVNTSGSFRCVCKAGFTRSRPHGACVPQRRR 1300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 13/33 (39%)
EGF_CA 212..247 CDD:238011 16/35 (46%)
EGF_CA 255..>286 CDD:214542 17/30 (57%)
EGF_CA 298..331 CDD:238011 15/34 (44%)
EGF_CA 338..373 CDD:238011 14/34 (41%)
EGF_CA 413..456 CDD:238011 18/43 (42%)
EGF_CA 457..490 CDD:238011 7/42 (17%)
EGF_CA 497..>529 CDD:214542 7/31 (23%)
EGF_CA 580..>612 CDD:214542 14/32 (44%)
EGF_3 676..702 CDD:289699 11/26 (42%)
EGF_CA 1022..1056 CDD:214542 17/36 (47%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
Ltbp3XP_006531731.1 EGF_CA 352..387 CDD:214542
TB 411..453 CDD:366245
EGF_CA 613..656 CDD:214542 17/42 (40%)
EGF_CA 657..691 CDD:238011 13/36 (36%)
EGF_CA 700..733 CDD:214542 16/35 (46%)
EGF_CA 741..781 CDD:214542 22/43 (51%)
EGF_CA 782..822 CDD:214542 16/40 (40%)
EGF_CA 823..862 CDD:214542 17/73 (23%)
EGF_CA 863..896 CDD:214542 16/34 (47%)
TB 926..969 CDD:366245 10/57 (18%)
EGF_CA 1033..>1061 CDD:214542 14/33 (42%)
EGF_CA 1079..1114 CDD:214542 17/39 (44%)
TB 1144..>1179 CDD:366245 12/61 (20%)
EGF_CA 1251..1289 CDD:214542 17/39 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I11870
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43451
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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