DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and Col6a3

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:NP_001229937.1 Gene:Col6a3 / 12835 MGIID:88461 Length:3284 Species:Mus musculus


Alignment Length:1161 Identity:226/1161 - (19%)
Similarity:330/1161 - (28%) Gaps:441/1161 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly 18282 PGTCGSGATCQVHNHVAMCQCPVGYQGNPFVLCQQTPLQAPVELHPCQPSPCGH------HGECR 18340
            ||..|.|.|........... |:|.:|                 .|.:|.|.|.      .||..
Mouse  2245 PGPRGGGGTAGAPGERGRTG-PLGRKG-----------------EPGEPGPKGSIGNRGPRGETG 2291

  Fly 18341 E-----VGSQAICTCRLGY--------YGSPPACRPECVSD-PECPPSL----------ACVNQK 18381
            :     |||:.    |.|.        |..|.....|..:| |..|..:          ....||
Mouse  2292 DDGRDGVGSEG----RRGKKGERGFPGYPGPKGTPGEPGADGPPGPKGIRGRRGNSGPPGATGQK 2352

  Fly 18382 CRDPCPGACGHLAQCHVINHSPQCVCPAGYTGSPYSECHLIRA--DSSPIQRQPID-PCLPSPCG 18443
            .....||..||                .|..|....:|.||::  |..|....|:: |..|:...
Mouse  2353 GDPGYPGPSGH----------------KGNRGDSVDQCALIQSIRDKCPCCYGPLECPVFPTELA 2401

  Fly 18444 PHAQCSNEG--GNAVCRCLTEYLGVPPYCRPECIANSECPSDRACINRKCQDPCPGLCGYNAICR 18506
             .|..::||  .:...|.....||:   .....||.|.||.                 |......
Mouse  2402 -FALDTSEGVTQDTFSRMREVLLGI---VGDLTIAESNCPR-----------------GARVAVV 2445

  Fly 18507 TYNH-------------------------------QPNCVCAPGLVG-NPFNSCL---------- 18529
            |||:                               |.:...|...|. |.|....          
Mouse  2446 TYNNEVTTEIRFADSKKKSALLDSIQNLQVALTSKQQSLETAMSFVARNTFKRVRSGFLMRKVAV 2510

  Fly 18530 ----PPTRPEIPATPP-------------TTAIQVLQYEEPFINGCEPN--PCGANAQCNQRR-- 18573
                .|||    |:|.             |......|.:...||..:.|  ..|.......||  
Mouse  2511 FFSNKPTR----ASPQLREAVLKLSDAGITPLFLTSQEDRQLINALQINNTAVGHALVLPARRDL 2571

  Fly 18574 -----GVVSC-VCL------PDY-FGNPYEACRPECILNSDCPLSRACVQQKCRDPCPGTCGLNA 18625
                 .|::| |||      |.. ||:...:.|......||..:..|.:..            ::
Mouse  2572 TDFLKNVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDLAFILD------------SS 2624

  Fly 18626 ECHVMDHLPQCRCFSGY-------TGNPLA--YCSPVPIIQESPLTPCDPSPCGP---------- 18671
            |...:....:.:.:.||       :.:|.|  :.:.|.::|:|.....|.:...|          
Mouse  2625 EATTLFQFNEMKKYIGYVIRQLDLSPDPKASQHFARVAVVQQSTYESVDNASVPPVKVEFSLTDY 2689

  Fly 18672 ---------------NAQCHPSLNEAVCSCLPEFYGTPPNCRPECTLNSECAYD----------K 18711
                           ..|....|..|:...:...:.:.||.|....:......|          :
Mouse  2690 GAKEKLLDFLSRRMTQLQGTMGLGNAIEYTIENIFESAPNPRDLKIMVLMLTGDMQRQQLEEAQR 2754

  Fly 18712 ACVHHKCVDPCPGICGINADCRVHYHSPICYCISSHTGDPFTRCYETPKPVRPQIYDTPSPPYPV 18776
            |.:..||......:.||.....:..    .|..:|...|.|.:..:.    ..::.:.|...:..
Mouse  2755 AILQAKCKGYFFVVLGIGRKVNIKE----VYSFASEPNDVFFKFVDK----STELNEEPLMRFGR 2811

  Fly 18777 AIPDLVYVQQQQPGIVNIPSAPQPIYPTPQSPQYNVNYPSPQPANPQKPGVVNIPSVPQPVYPSP 18841
            .:|..|             |:....|..|...:....:...||.   |.||         .:...
Mouse  2812 LLPSFV-------------SSENAFYLPPDLRKQCDWFQGDQPV---KNGV---------KFGHK 2851

  Fly 18842 QPPVYDVNYPTTPVSQHPGVVNIPSAPRLVPPTSQRPVFITSPGNLSPTPQPGVINIPSVSQPGY 18906
            |     :|.|.|        .|.....::|  |:.:||..|.|        ..::|:|    |..
Mouse  2852 Q-----INPPHT--------ANSSLTSKVV--TTMKPVTTTKP--------TAIVNLP----PAK 2889

  Fly 18907 PTPQSPIYDANYPTTQSPIPQQPGVVNIPSVPSPSYPAPNPPVNYPTQPSPQIPVQPGVINIPSA 18971
            |.|            ..|.|.||    :.:.|.|:.||...|.  |.:|:....|.|..:::..|
Mouse  2890 PAP------------ARPAPAQP----VLAKPDPAKPAQARPA--PAKPASAKLVPPQPVHVQPA 2936

  Fly 18972 PLPTTPPQHPPVFIPSPESPSPAPKPGVINIPSVTHPEYPTSQVPVYDVNYSTTPSPIPQKPGVV 19036
            |..|...:      |:|..|:| |:|                          ....|:|.||.| 
Mouse  2937 PAQTASVR------PAPAKPAP-PQP--------------------------AAAKPVPAKPAV- 2967

  Fly 19037 NIPSAPQPVHPAPNPPVHEFNYPTPPAVPQQPGVLNIPSYPTPVAPTPQSPIYIPSQEQPKPTTR 19101
              |:.|.|..||...||     |..||||.||            ||                   
Mouse  2968 --PAQPAPPQPAAAKPV-----PAKPAVPAQP------------AP------------------- 2994

  Fly 19102 PSVINVPSVPQPAYPTPQAPVYDVNYPTSPSVIPHQPGVVNIPSVPLPAPPVKQRPVFVPSPVHP 19166
                     ||||...|        .|..|:| |.||....    |:||.||..:          
Mouse  2995 ---------PQPAAAKP--------VPAKPAV-PAQPAAAQ----PMPAQPVLTK---------- 3027

  Fly 19167 TPAPQPGVVNIPSVAQPV-----HPTYQPPVVERPAIYDVYYPPPPSRPGVINIPSPPRPVYPVP 19226
            :.|.:|...|.|..|:||     ..|.:|.:..:||.    ..|..:||    :.:..|||...|
Mouse  3028 SAAVKPASANKPVAAKPVATNTATATARPALAAKPAA----AKPAATRP----LAAAIRPVATKP 3084

  Fly 19227 QQPIYVPAPVLHIPAPRPVIHNIPSVPQPTYPHRNPPIQDVT-------YPAPQPS 19275
            :.|.....|....||....:..:         .|...:.:||       :..|:||
Mouse  3085 EAPRQQAKPAATKPATTKPLARV---------SREVQVSEVTENSARLHWERPEPS 3131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699
EGF_CA 212..247 CDD:238011
EGF_CA 255..>286 CDD:214542
EGF_CA 298..331 CDD:238011
EGF_CA 338..373 CDD:238011
EGF_CA 413..456 CDD:238011
EGF_CA 457..490 CDD:238011
EGF_CA 497..>529 CDD:214542
EGF_CA 580..>612 CDD:214542
EGF_3 676..702 CDD:289699
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883 11/64 (17%)
Med25_SD1 18795..18955 CDD:288132 34/159 (21%)
MISS 19026..19258 CDD:292450 59/236 (25%)
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
Col6a3NP_001229937.1 vWFA 37..201 CDD:294047
vWFA 240..404 CDD:294047
vWFA 443..607 CDD:294047
vWFA 637..801 CDD:294047
vWFA 835..998 CDD:294047
vWFA 1025..1188 CDD:294047
vWFA 1229..1391 CDD:294047
vWA_collagen_alpha3-VI-like 1432..1596 CDD:238758
VWA 1636..1807 CDD:278519
VWA 1836..1991 CDD:214621
Collagen 2035..2105 CDD:189968
Collagen 2110..2179 CDD:189968
Collagen 2152..2215 CDD:189968
Collagen 2192..2287 CDD:189968 12/59 (20%)
Collagen 2267..2333 CDD:189968 18/86 (21%)
Collagen 2305..2362 CDD:189968 11/56 (20%)
VWA 2400..2577 CDD:278519 33/201 (16%)
VWA 2616..2803 CDD:278519 27/206 (13%)
fn3 3109..3177 CDD:278470 6/23 (26%)
Kunitz_BPTI 3227..3278 CDD:278443
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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