DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpy and ltbp3

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_002935409.2 Gene:ltbp3 / 100490885 XenbaseID:XB-GENE-6050660 Length:1146 Species:Xenopus tropicalis


Alignment Length:1159 Identity:280/1159 - (24%)
Similarity:375/1159 - (32%) Gaps:429/1159 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 QDCFLG-ADELSKELKCTNDCDKDGT--------KC----------------THGACLNGVCHCN 117
            |||... ...|:||..|   |...||        ||                .||:      :|.
 Frog   251 QDCSTNPLPGLTKEEDC---CGSVGTSWGQHKCHKCPQLSYSGTHKTAPFRGEHGS------NCP 306

  Fly   118 DGYGGCNCVD-KDENECKQRPCDVFAHCTNTLGSFTCTCFPGY--RGNGFHCE------------ 167
            .||...|... :|.|||..:.......|.||.|||.|||..||  ..:..||.            
 Frog   307 QGYKRLNSTHCQDINECVMQGVCQNGECLNTQGSFRCTCKHGYIFISSQMHCAPEKPEVKGLCYR 371

  Fly   168 ---DIDECQDPAIAARCVENAECCNL---------------PAHF--LCKCKDGYE--------- 203
               ...:||.| ::.|......||::               .|.|  :|....||.         
 Frog   372 LVGTDGQCQHP-LSTRLTRQLCCCSVGKAWGSQCEPCPADGTASFSEICPAGKGYHVLMSHQTLT 435

  Fly   204 ---------------GDGEVLCTDV-DECRNPENCGPNALCTNTPGNYTCSCPDGY--------- 243
                           |:.:.|...| |....|:...|:    ::.|:.|......|         
 Frog   436 IQAHSDFTLHLHPEGGENQPLVPRVPDVVAPPKITEPD----SSDGDVTAPVLPAYSTHSEEESV 496

  Fly   244 -------------------------VGNNP---YREGCQDV--------DECSYP-NVCGPGAIC 271
                                     |.|.|   |.....::        |||... ::||.|. |
 Frog   497 DFAPVITTTQGISFPEVALKPTVVAVKNIPPEYYNRSAVEIAVTKGTETDECKLTRDLCGFGE-C 560

  Fly   272 TNLEGSYRCDCPPGYDGDGRSESGCVDQDECARTPCGRNAD-CLNTDGSFRCLCPDGYS---GDP 332
            .:....|.|.|.|||......:. |:|.:||.:.|||.... ||||.|||.|.|..||.   .:.
 Frog   561 ISTPSGYYCSCYPGYQPHPERKH-CIDINECDKNPCGPGRGVCLNTGGSFNCRCHLGYRLQVANE 624

  Fly   333 MNGCEDVDECATNNPCGLGAECVNLGGSFQCRCPSGFVLEHDPHADQLPQPLNTQQLGYGPGATD 397
            :..|.||:||.....||....|.|..||::|.|                      ||||      
 Frog   625 LRSCVDVNECLRTGVCGDSRSCFNFPGSYKCEC----------------------QLGY------ 661

  Fly   398 IAPYQRTSGAGLACLDIDEC--NQPDGVAKCGTNAKCINFPGSYRCLCPSGFQGQGYLHCENINE 460
               .|||: ..|.|.|||||  .||     | ...||||.|||:||:||.|::    ||.::|  
 Frog   662 ---KQRTT-RPLVCEDIDECLSRQP-----C-VGGKCINIPGSFRCVCPPGYK----LHNQHI-- 710

  Fly   461 CQDNPCGENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCENTVPGYNCKC 525
                                              |.|||||......|..|..|||....|.|.|
 Frog   711 ----------------------------------CKDIDECLLNPDLCSPHGTCENVDGSYMCIC 741

  Fly   526 PQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGSSCVDIDECRTHAEV 590
            ..||....|.| .||:|   :......||..:   :::..||        .|.:.::..|   |.
 Frog   742 DTGYTPSEDRK-RCEEV---VRSLDRRDCFLS---LDDSLFC--------DSVLAVNVTR---EQ 788

  Fly   591 CGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGAHAYCKPDQNEA--YCVCEDG--- 650
            |     |.:....:|..||.            .||            |..|.|  ..:|.||   
 Frog   789 C-----CCSLGAGWGDHCEI------------YPC------------PVHNSAEFSTLCPDGIGF 824

  Fly   651 ------WTYNPSDVAAGCVDIDECDVMHGPFGS--CGQNATCTNSAGGFTCACPPGFSGDPH-SK 706
                  .||......    |||||.:    ||.  | :...|.|:...:.|.|..|:..|.. .:
 Frog   825 IIDLDIMTYGSPTYR----DIDECQL----FGQEIC-KEGMCVNTKPSYECYCKHGYYYDNRLLQ 880

  Fly   707 CVDVDECRTGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSVRCVPIVSCSANEDCPGNSICD 771
            |:||||| ...|.|..| .|:|..|..| |.||.:|...|:                        
 Frog   881 CMDVDEC-VDESNCING-RCMNTRGSFY-CHCPQHTQYHPE------------------------ 918

  Fly   772 ATKRCLCPEPNIGNDCRHPCEALNCGAHAQCMLANGQAQCLCAPGYTGNSALAGGCNDIDECRAN 836
             .|:||                                         .|:.|     |:||||..
 Frog   919 -LKQCL-----------------------------------------SNAEL-----DVDECRDP 936

  Fly   837 PCAEKAICSNTAGGYLCQCPGGSSGDPYREGCITSKTVGCSDANPCATGETCVQDSYTGNSVC-- 899
            .......|.||.|.:.|:|....:.||....|           ||..     :|.......:|  
 Frog   937 GLCRNGRCVNTHGSFHCECTHPWTLDPLGRHC-----------NPPE-----MQSDREAQDICWR 985

  Fly   900 ------ICRQGYERNSENGQCQDVDECSVQRGKPACGLNALCKNLPGSYECRCPQGHN-GNPFIM 957
                  ||.|     |..|....:.||..::|:   |....|.:.|..:..:|...|: .|.|..
 Frog   986 MRGTDGICSQ-----SMPGPQLSLAECCCRQGQ---GWGLSCHSCPPRHALQCSASHSEANSFWE 1042

  Fly   958 CEICNTPECQCQSPYKLVGNS---CVLSGCSSGQACPSGAECISIAGGVSYCACPKGYQTQPDGS 1019
            ....:..:.:........|:.   ||...|..|..            ||| |.||.|:|.....:
 Frog  1043 SSALHIKKYRRDHDSSEEGSDECPCVNGHCRRGPY------------GVS-CECPVGFQLDITRT 1094

  Fly  1020 -CVDVDECEERG--AQLCAFGAQCVNKPGSYSCHCPEGYQGDAYNGLCALAQRK 1070
             |:|:|||.::.  ..||. .::|:|..||:.|.|..||.....:.:| :.|||
 Frog  1095 RCLDLDECRQKNPRGSLCK-NSRCINTMGSFRCVCKPGYTRFPNHHIC-IPQRK 1146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 11/30 (37%)
EGF_CA 212..247 CDD:238011 8/69 (12%)
EGF_CA 255..>286 CDD:214542 11/39 (28%)
EGF_CA 298..331 CDD:238011 17/36 (47%)
EGF_CA 338..373 CDD:238011 12/34 (35%)
EGF_CA 413..456 CDD:238011 22/44 (50%)
EGF_CA 457..490 CDD:238011 1/32 (3%)
EGF_CA 497..>529 CDD:214542 13/31 (42%)
EGF_CA 580..>612 CDD:214542 7/31 (23%)
EGF_3 676..702 CDD:289699 7/27 (26%)
EGF_CA 1022..1056 CDD:214542 13/35 (37%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
ltbp3XP_002935409.2 EGF_CA 319..>349 CDD:214542 13/29 (45%)
TB 379..420 CDD:395554 8/41 (20%)
cEGF 566..589 CDD:403760 8/23 (35%)
EGF_CA 586..618 CDD:214542 16/31 (52%)
EGF_CA 630..666 CDD:214542 18/66 (27%)
EGF_CA 673..707 CDD:238011 21/43 (49%)
EGF_CA 713..755 CDD:214542 17/42 (40%)
TB 776..819 CDD:395554 14/82 (17%)
EGF_CA 883..>910 CDD:214542 13/29 (45%)
EGF_CA 929..968 CDD:214542 13/38 (34%)
TB 993..>1026 CDD:395554 10/40 (25%)
EGF_CA 1098..1133 CDD:214542 13/35 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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