DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and ltbp1

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_012819247.1 Gene:ltbp1 / 100488719 XenbaseID:XB-GENE-488058 Length:1698 Species:Xenopus tropicalis


Alignment Length:1062 Identity:299/1062 - (28%)
Similarity:398/1062 - (37%) Gaps:306/1062 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 NDCDKDGTKCTHGACLN----GVCHCNDGY----GGCNCVDKDENECKQRP--CDVFAHCTNTLG 149
            |:|..|...|..|.|:|    ..|.|..||    ....||  |.|||.:.|  |. ...|.||.|
 Frog   838 NECAVDVNICGEGNCINLPVGYTCLCFTGYKLNEQKTKCV--DINECAEDPHLCS-HGRCENTKG 899

  Fly   150 SFTCTCFPGYRGN--GFHCEDIDECQDPAIAARCVENAECCNLPAHFLCK-CKDGYEGDGEVLCT 211
            .|.|.|..||..|  |..|.|::||..|   ..|.|:..|.|....|.|: |:.|:..:....|.
 Frog   900 RFLCICHAGYMANEQGIDCVDVNECLRP---HACEEDGLCINTIGSFGCEYCEKGFRHNQRGECE 961

  Fly   212 DVDECRNPENCGPNALCTNTPGNYTC-SCPDGYVGNNPYREGCQDVDECSY-PNVCGPGAICTNL 274
            |::||.|...| |:..|.|:.|:|:| .||||:.|.|..   |.|::||.. .:||..|. |:||
 Frog   962 DINECLNQLTC-PHDRCVNSVGSYSCVPCPDGFNGLNGQ---CFDINECQEDTSVCANGD-CSNL 1021

  Fly   275 EGSYRCDCPPGYD--GDGRSESGCVDQDECARTPCGRNADCLNTDGSFRCLCPDGY----SGDPM 333
            ||||||.|..|||  .||:.   |:|.:||.......|..|.||:|||.|.|.:||    |||. 
 Frog  1022 EGSYRCTCHRGYDVTSDGKQ---CIDINECQSGTLCLNGLCQNTEGSFECSCNEGYQLAPSGDQ- 1082

  Fly   334 NGCEDVDECATNNPCGLGAECVNLGGSFQCRCPSGFVLEHDPHADQLPQPLNTQQLGYGPGATDI 398
              |.|:|||...|.|..| :|.|..|||.|.|..|:                             
 Frog  1083 --CHDIDECQNTNLCSNG-QCRNTRGSFSCICHQGY----------------------------- 1115

  Fly   399 APYQRTSGAGLACLDIDECNQPDGVAKCGTNAKCINFPGSYRCLCPSGFQGQGYLHCENINEC-Q 462
                :.|..|..|.|||||.:...|  |.....|.|..|||.|.||.||.....:.|::|||| |
 Frog  1116 ----KVSADGEQCEDIDECQEEAEV--CLGGGSCHNTDGSYECTCPDGFLLVDGIRCQDINECEQ 1174

  Fly   463 DNPCGENAICTDTVGSFVCTCKPDYTGDP-FRGCVDIDECTALDKPCGQHAVCENTVPGYNCKCP 526
            .:.|..|..|.:|.||:.|.|:..:|... .|.|.|:||| |....||...:||||...|.|.|.
 Frog  1175 PDLCNPNGECLNTEGSYHCICEQGFTTSANGRSCEDVDEC-ANTTQCGSQGICENTDGSYRCLCY 1238

  Fly   527 QGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGSSCVDIDECRTHAEVC 591
            |||.                                      |.|:  |..|||::||...:.||
 Frog  1239 QGYQ--------------------------------------DSFD--GQGCVDVNECEMLSGVC 1263

  Fly   592 GPHAQCLNTPGSYGCEC-EAGYVGSPPRMACKQPCEDVRCGAHAYCKPDQNEAYCVCEDGWTYNP 655
            | .|:|.|..||:.|.| :......|....|:.  .::. |.:::...:.:..........|:|.
 Frog  1264 G-EARCENVEGSFLCLCTDESQEYDPMTGHCRN--HNLH-GINSFGDSNTDSLLNAFSPSVTHNT 1324

  Fly   656 SDVAAGCVDIDECDVMHGPFGS--CGQNATCTNSAGGFTCACPPGFSGDPHSKCVDVDECRTGAS 718
            .:     .|.|:.|..:...|.  | ||....|.:....|                   |..|| 
 Frog  1325 DE-----NDEDQKDCYYNIIGDDFC-QNVLAANVSKQECC-------------------CTLGA- 1363

  Fly   719 KCGAGAECVNVPGGGYTCRCPGNTIADPDPSVRCVPIVSCSANEDCPGNSICDATKRCLCPEPNI 783
              |.|..|...|                     |..|.|....|.|||......:|..:..    
 Frog  1364 --GWGDNCEIYP---------------------CPVIGSDEFTEMCPGGKGYIPSKESMYE---- 1401

  Fly   784 GNDCRHPCEALNCGAHAQCMLANGQAQCLCAPGYTGNSALAGGCNDIDECRANPCAEKAICSNTA 848
            |||       |:.....:|||...:   :|..||                          |.||.
 Frog  1402 GND-------LSYQDADECMLFGKE---ICKNGY--------------------------CLNTE 1430

  Fly   849 GGYLCQCPGGSSGDPYREGCITSKTVGCSDANPCATGETCVQDSYTGNSVCICRQGYERNSENGQ 913
            ..|.|.|..|:..||.:..||.:..  |.|.:.|..|: |:.:.  |:..|.|......:....:
 Frog  1431 SSYECYCKQGTYYDPVKLQCIDNNE--CEDPSSCIDGQ-CINNE--GSYSCFCTHPMILDESGKR 1490

  Fly   914 C-----------------------QDVDE---CSVQRGKPACGLNALCKNLPGSY-ECRCPQGHN 951
            |                       |::.|   ||    :|..|...       :| ||.|..|..
 Frog  1491 CIQPKPVDTSEPTEETDVYQDFCWQELSEEFVCS----QPLVGRRT-------TYTECCCLFGEA 1544

  Fly   952 GNPFIMCEICNTPE-------CQCQ-------------------SPY---------KLVGNSC-V 980
            ..  :.|.:|.|.:       |..|                   .||         :|....| :
 Frog  1545 WG--MQCALCPTKDSEDYAELCNLQYRRPYGHDALIDPYTSHDSGPYEIPERYSYEELQAEECGI 1607

  Fly   981 LSGCSSGQACPSGAECISIAGGVSYCACPKGYQ-TQPDGSCVDVDECEERGAQ--LCAFGAQCVN 1042
            |:||.:|:       |:.:..|.: |.|..||. .....:||||:||.|..::  ||. .|:|:|
 Frog  1608 LNGCENGR-------CVRVQEGYT-CDCFDGYHLDMAKMTCVDVNECNELNSKMSLCK-NAKCIN 1663

  Fly  1043 KPGSYSCHCPEGYQGDAYNGLC 1064
            ..|||.|.|..||:..|....|
 Frog  1664 TEGSYKCVCLPGYKPSAKPNYC 1685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 13/32 (41%)
EGF_CA 212..247 CDD:238011 16/35 (46%)
EGF_CA 255..>286 CDD:214542 16/31 (52%)
EGF_CA 298..331 CDD:238011 15/36 (42%)
EGF_CA 338..373 CDD:238011 15/34 (44%)
EGF_CA 413..456 CDD:238011 17/42 (40%)
EGF_CA 457..490 CDD:238011 14/33 (42%)
EGF_CA 497..>529 CDD:214542 15/31 (48%)
EGF_CA 580..>612 CDD:214542 13/32 (41%)
EGF_3 676..702 CDD:289699 6/27 (22%)
EGF_CA 1022..1056 CDD:214542 16/35 (46%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
ltbp1XP_012819247.1 EGF_CA 596..>626 CDD:214542
TB 659..701 CDD:366245
cEGF 858..881 CDD:372248 7/24 (29%)
vWFA <872..916 CDD:381780 18/46 (39%)
EGF_CA 920..957 CDD:214542 12/39 (31%)
EGF_CA 962..>993 CDD:214542 14/31 (45%)
EGF_CA 1002..1033 CDD:238011 16/31 (52%)
cEGF 1024..1047 CDD:372248 12/25 (48%)
EGF_CA 1044..1075 CDD:214542 13/30 (43%)
EGF_CA 1085..1125 CDD:214542 17/73 (23%)
EGF_CA 1126..1167 CDD:214542 17/42 (40%)
EGF_CA 1168..1209 CDD:214542 15/40 (38%)
EGF_CA 1210..1243 CDD:214542 17/71 (24%)
TB 1344..1387 CDD:366245 16/86 (19%)
TB 1522..1565 CDD:366245 12/55 (22%)
EGF_CA 1642..>1676 CDD:214542 15/34 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48600
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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