DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and ltbp4

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_031747134.1 Gene:ltbp4 / 100488208 XenbaseID:XB-GENE-992148 Length:1805 Species:Xenopus tropicalis


Alignment Length:1646 Identity:426/1646 - (25%)
Similarity:568/1646 - (34%) Gaps:547/1646 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 CDGTQDCFLGADELS----KELKCTN----DCDK--DGTKCTHGACLNG----VCHCNDGYGGCN 124
            |:|.|...|.|..:.    |..:..|    |.|:  |.|.|.:|.|.|.    .|.|.:||    
 Frog   462 CNGHQGDVLSASVIDTPCPKGFERINGTCIDIDECTDSTLCVNGDCTNTRGSYTCMCREGY---- 522

  Fly   125 CVDKDENEC--------KQRPCDVFAH-----------------CTNTLGSF------------- 151
            .:|...:.|        .:.||.....                 |.:.:|..             
 Frog   523 LLDSSRSSCISHHVISEVKGPCFRILRDGKCSLPILRNITKQICCCSRVGKAWGKGCEQCPPFGT 587

  Fly   152 -----TCTCFPGY-----------------------------RGNGF-------HC--------- 166
                 ||...|||                             ||..|       |.         
 Frog   588 EGFKETCPAGPGYHYSASDLRINTRYVGQDQARVPLLRQPASRGFPFTTASPVYHAVTGHITVER 652

  Fly   167 -EDIDE-----------CQDPAIAAR------------------------------CVENAECCN 189
             :|||:           .::|..|.|                              |..|.:.|.
 Frog   653 QQDIDQSRISSPNQRVPSREPVSANRSISGPDRVSVLPAPVPTETQKEAPSQESSICELNPQICG 717

  Fly   190 ----LP--AHFLCKCKDGY----EGDGEVLCTDVDECRNPENCGPNALCTNTPGNYTCSCPDGYV 244
                :|  ..:.|.|..||    :|   ..|.|:||||...:...|..|.||.|:|.|:|..|: 
 Frog   718 PGRCVPRLGSYTCVCNTGYWLSTQG---THCIDMDECRQRPSLCTNGRCENTVGSYRCACSAGF- 778

  Fly   245 GNNPYREGCQDVDECSYPNV-CGPGAICTNLEGSYRCDCPPGYDGDGRSESGCVDQDECARTP-- 306
            ..||....|.|:||||.... |..|. |.|..|||||.|.||:..:.:.:| |:|.|||..:|  
 Frog   779 STNPQGTECTDIDECSTDQTPCDNGR-CENTPGSYRCFCSPGFTLNPQGKS-CIDIDECRISPRR 841

  Fly   307 -C--GRNADCLNTDGSFRCLCPDGYSGDPM-NGCEDVDEC-ATNNPCGLGAECVNLGGSFQCRCP 366
             |  ||   |.||.|||.|:||.||:.:|. ..|:|.||| .|...||.| .|.|..|||:|.||
 Frog   842 FCLSGR---CENTPGSFLCVCPVGYTANPQGTDCQDTDECRQTPRICGSG-RCQNTPGSFRCSCP 902

  Fly   367 SGFVLEHDPHADQLPQPLNTQQLGYGPGATDIAPYQRTSGAGLACLDIDECNQPDGVAKCGTNAK 431
            .|:.|        .||                         |..|:||:||..|...|    ..:
 Frog   903 VGYRL--------TPQ-------------------------GNECIDINECENPGACA----GQE 930

  Fly   432 CINFPGSYRC-LCPSGFQGQGYLHCENINECQ-DNPCGENAICTDTVGSFVCTCKPDYTGDPFRG 494
            |:|.|||::| .|.||::.|. ..|.:||||| |:.||.:..|.:|.|||.|.|.|.|..:....
 Frog   931 CLNTPGSFQCRQCHSGYRLQN-RRCVDINECQTDSACGRHGKCINTEGSFECECLPGYHLNDRNR 994

  Fly   495 CVDIDECTALDKPCGQHAVCENTVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAE 559
            |.||:||...|. |.....|:||...|.|.|.:||...||                         
 Frog   995 CTDINECLEGDF-CFPRGECQNTEGSYICVCAEGYVTTPD------------------------- 1033

  Fly   560 CIENQCFCLDGFEPIGSSCVDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACK-- 622
                           |:||||.|||: ...:| ...:|:||.||:.|:|..|:..:..:.||.  
 Frog  1034 ---------------GASCVDKDECQ-QGTLC-QGGRCINTQGSFQCQCPTGFRVTFNKAACTDI 1081

  Fly   623 QPCED---VRCGAHAYCKPDQNEAYCV--CEDGWTYNPSDVAAGCVDIDECDVMHGPFGSCGQNA 682
            ..|::   ..||..: |:.......|:  |:.|:....|   ..|.||:||    .....||.||
 Frog  1082 DECQERGTSLCGTQS-CENTLGSYRCIAQCDTGYRLTAS---GDCEDINEC----ANSTICGDNA 1138

  Fly   683 TCTNSAGGFTCACPPGFSGDPHSK-CVDVDEC-RTGASKCGAGAECVNVPGGGYTCRCPGNTIAD 745
            .|.|..|.:.|.|..|.......: |:||||| ..|.|.||. ..|.|.||              
 Frog  1139 VCKNLLGSYRCTCNWGHEMSSEGQHCIDVDECLEYGRSICGT-KRCENTPG-------------- 1188

  Fly   746 PDPSVRCVPIVSCSANEDC-PGNSICDATKRCLCPEPNIGNDCRHPCEALN---CGAHAQCMLAN 806
               |.||:        .|| ||..:..:            .||....|.||   ||.||.|....
 Frog  1189 ---SYRCI--------SDCEPGYQLSSS------------GDCTDINECLNKTVCGDHAMCHNLA 1230

  Fly   807 GQAQCLCAPGYTGNSALAGG---CNDIDECRA--NPCAEKAICSNTAGGYLCQCPGGSSG-DPYR 865
            |..||||..||.|    |.|   |.|::||..  :.|. .|:|.|..|.:||.||..... ||..
 Frog  1231 GTYQCLCDQGYEG----ARGERHCVDVNECLTLQSVCG-TALCENVEGSFLCTCPNSKEEFDPMS 1290

  Fly   866 EGCITSKTVGCSDANPCATGETCVQDSYTGNSVCICRQGYERNSENGQCQDVDECSVQRGKPACG 930
            ..||.|.:. .....|.....:.|....:|:..|.              .:::|..|      ||
 Frog  1291 GKCIRSNST-IRPVLPSLPSPSQVDTLTSGHKECY--------------YNLEESEV------CG 1334

  Fly   931 LNALCKNLPGSYECRCPQGHN-GNPFIMCEICNTPECQCQSPYKLVGNSCVLSGCSSGQACPSGA 994
             |.|.:|:... ||.|..|.. |.....|...:|.|.|.                    .||.|.
 Frog  1335 -NVLARNVSRD-ECCCSIGEGWGQNCERCPAIDTAEYQA--------------------LCPRGG 1377

  Fly   995 ECISIAGGVSYCACPKGYQTQPDGSCVDVDECEERGAQLCAFGAQCVNKPGSYSCHCPEGYQGDA 1059
                            ||.....| ..|::||:..|.|||. |..|:||..|:||:|..||..| 
 Frog  1378 ----------------GYTISQQG-LKDINECQIFGNQLCK-GGFCLNKIPSFSCYCSNGYYYD- 1423

  Fly  1060 YNGLCALAQR-KCAADRECAANEKCIQPGECV---------CPPPYFLDPQDNNKCKSPCERFPC 1114
                   .|| :|..:.||...|.| :.|.|:         |.||..||.....          |
 Frog  1424 -------VQRLECVDNDECHEEELC-EGGNCINTVGSYYCTCNPPLVLDSTQRR----------C 1470

  Fly  1115 GINAKCT-PSDPPQCMCEAGFKGD-----PLL--GCTDEDECSHLPCAYGAYCVNKKGGYQCVCP 1171
            ..|...| ..:...|..|.|  .|     |||  ..|..:.|.|...|:|.:|        .:||
 Frog  1471 VANTSQTIDENLSYCWQEIG--ADMLCKRPLLERQTTYTECCCHYGEAWGLHC--------ALCP 1525

  Fly  1172 KDYTGDPYKSGCI----FESGTPKSKCLSNDDCASNLACLEGSCVSPCSSLLCGSNAYCETEQHA 1232
            ...| |.::|.||    .::|.|.....|..|..:..    |....|     .|.:|:.......
 Frog  1526 GRDT-DDFESLCIDWRPTDTGNPGPPQPSLYDYGTEY----GGYGVP-----YGPDAFANPPPRI 1580

  Fly  1233 GWCRCRVGY-----------------VKNGDGDCVSQC---------QDVICGDGALCIPTSEGP 1271
                .|.||                 :..|..|.:...         .|:...|.::..|  ..|
 Frog  1581 ----VRPGYESYPAAPGGMSFGSRPSLPYGPRDSLYSLPPYESPDFDSDIYYPDPSVEEP--RNP 1639

  Fly  1272 TCKCPQGQLGNPFPGG----SCSTDQCSAAR-PCGERQICINGRCKERCEGVVCGIGATCDRNNG 1331
            ..:....:..||:|..    |.|||..|... ..|.|      |.:.|..|         .|:.|
 Frog  1640 FRRTDSSRDPNPYPSAPRSRSRSTDISSRFEVDAGGR------RVQPRRPG---------SRDPG 1689

  Fly  1332 KCICEPNFVGNPDLICMPPIEQAKCSPGCGENAHCEYGLGQSRCACNPGTFGNPYEGCGAQSKNV 1396
            ......::.|:|........||                                :||..|:...:
 Frog  1690 SVSSISSWRGDPREAFDDRYEQ--------------------------------FEGLQAEECGI 1722

  Fly  1397 CQPNSCGPNAECRAVGNHISCLCPQGFSGN-PYIGCQDVDECANKP-----CGLNAACLNRAGGF 1455
            .  |.| .|..|..|....:|.|..|:..: ..:.|.|::||....     | ||..|.|..|.:
 Frog  1723 L--NGC-ENGRCIRVPEGYTCDCYDGYRLDITLMACVDINECDEAEDLSLLC-LNGQCRNTDGSY 1783

  Fly  1456 ECLCLSGHA-GNPYSSCQPIE 1475
            ||:|..|:. ...::.|.||:
 Frog  1784 ECVCPRGYVLSRHHNYCLPIQ 1804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 12/99 (12%)
EGF_CA 212..247 CDD:238011 14/34 (41%)
EGF_CA 255..>286 CDD:214542 16/31 (52%)
EGF_CA 298..331 CDD:238011 19/37 (51%)
EGF_CA 338..373 CDD:238011 18/35 (51%)
EGF_CA 413..456 CDD:238011 16/43 (37%)
EGF_CA 457..490 CDD:238011 17/33 (52%)
EGF_CA 497..>529 CDD:214542 12/31 (39%)
EGF_CA 580..>612 CDD:214542 12/31 (39%)
EGF_3 676..702 CDD:289699 10/25 (40%)
EGF_CA 1022..1056 CDD:214542 16/33 (48%)
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
ltbp4XP_031747134.1 EGF_CA 492..>522 CDD:214542 10/29 (34%)
TB 553..595 CDD:395554 3/41 (7%)
cEGF 727..750 CDD:403760 7/25 (28%)
EGF_CA 747..787 CDD:311536 16/40 (40%)
EGF_CA 789..830 CDD:214542 18/42 (43%)
EGF_CA 831..872 CDD:311536 20/43 (47%)
EGF_CA 874..914 CDD:311536 21/73 (29%)
EGF_CA 916..955 CDD:214542 16/43 (37%)
EGF_CA 956..996 CDD:214542 17/39 (44%)
EGF_CA 997..1038 CDD:214542 18/81 (22%)
EGF_CA 1039..1070 CDD:214542 13/32 (41%)
EGF_CA 1124..1165 CDD:238011 14/44 (32%)
EGF_CA 1210..1245 CDD:238011 16/38 (42%)
TB 1333..1374 CDD:395554 14/62 (23%)
EGF_CA 1431..>1459 CDD:214542 7/28 (25%)
TB 1495..1536 CDD:395554 14/49 (29%)
PHA03247 <1543..1695 CDD:223021 32/181 (18%)
EGF_CA 1757..1796 CDD:214542 13/39 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48600
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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