DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpy and col6a5

DIOPT Version :9

Sequence 1:NP_001260032.1 Gene:dpy / 318824 FlyBaseID:FBgn0053196 Length:22949 Species:Drosophila melanogaster
Sequence 2:XP_012820988.2 Gene:col6a5 / 100486063 XenbaseID:XB-GENE-6451494 Length:2771 Species:Xenopus tropicalis


Alignment Length:1014 Identity:197/1014 - (19%)
Similarity:269/1014 - (26%) Gaps:453/1014 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 GSFTCTCFPGYRG----NGFHCEDIDECQDPAIAARCVENAECCNLPAHFLCKCKDGYEGDGEVL 209
            |||.....||.:|    ||       |..:|.|..|       ..||         |.:|     
 Frog  2019 GSFGKPGAPGLKGEPGENG-------EKGEPGIPGR-------RGLP---------GLDG----- 2055

  Fly   210 CTDVDECRNPENCGPNALCTNTPGNYTCSCPDGYVG--NNPYREGCQDVDECSYPNVCGPGAICT 272
                     |:..||       ||   .....|::|  .:|..:| :|.|    |.:.|.|. ..
 Frog  2056 ---------PDGYGP-------PG---LKGEKGHLGFPGDPGPQG-EDGD----PGIAGNGG-PK 2095

  Fly   273 NLEGSYRCDCPPGYDGDGRSESGCVDQDECARTPCGRNADCLNTDGSFRCLCPDGYSGD-PMNGC 336
            .:.|......|||.:|. |.|.|       .|.|.|..                |..|. ||..|
 Frog  2096 GISGRRGNSGPPGTNGQ-RGERG-------PRGPMGAK----------------GLPGTMPMTPC 2136

  Fly   337 EDVDECATNNPCGLGAECVNLGGSFQCRC---PSGFVLEHDPHADQLPQPLNTQQLGYGPGATDI 398
            |.|.....|.||...|.          :|   |:..|...|...|..|                 
 Frog  2137 ELVAFTRENCPCFASAS----------KCPVYPTEIVFALDASQDVPP----------------- 2174

  Fly   399 APYQRTSGAGLAC---LDIDECNQPDG----VAKCGTNAK-CINFPG---------SYRCLCPSG 446
            |.:||.....::.   |||.|.|.|.|    |....:|.| .|.|..         :.|.:.|..
 Frog  2175 AAFQRMKNTIISIIEKLDISESNCPRGARVAVVAYNSNTKYLIRFSDYKRKSLLLEAIRGISPER 2239

  Fly   447 FQGQGYLHCENINECQDNPCGEN-------AICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTAL 504
            ...:     .||.|.. ...|.|       .|....|..|... .|....|.....|  .|.:||
 Frog  2240 SSSR-----RNIGEAM-KFVGRNIFKRIRHGIHVRKVAVFFAN-GPSPDADAINSAV--LEYSAL 2295

  Fly   505 D-KPCGQHAVCENTVPGYNCKCPQGYD----------GKPDPKVACEQVDVNILCSSNFD-CTNN 557
            | .|.   .:..|.||  |.......|          .:|:.    :::::...|:..:| ||.:
 Frog  2296 DIIPI---VIAFNNVP--NVVAAFSADETRRFQVFVWSRPED----QRLELISYCTLCYDKCTPD 2351

  Fly   558 AECIENQ----------CFCLDG--------FEPIG---SSCVD---------IDECRTHAEVC- 591
            .||..:|          .|.||.        ||.:.   ||.:|         :.|  |.|.|. 
 Frog  2352 EECELDQMPATLIDMDIAFVLDSSHNVQADVFEEMKDFVSSMLDTVYISTRPAVSE--TEARVAL 2414

  Fly   592 --------GPH----------------------------AQCLNTPGSYGCECEAGYV------- 613
                    ||:                            .:.||.|.:.|...:  :|       
 Frog  2415 VQQAVKDFGPNRNTSPVKTEFDLLRYNSANMMKRHIKQSVRQLNGPSAVGNSVQ--WVIDNIFLK 2477

  Fly   614 --------------GSP----PRMACKQPCEDVRCGAHA-------------------------- 634
                          .||    .|...|:..:..:|...|                          
 Frog  2478 TPMPRKHKVLFLILASPTSYWDREKLKEVSKKAKCQGFAIFVLGFGKTISELEMTQLPSLPQDQH 2542

  Fly   635 -------------YCKPDQNEAYCVCEDGWTYNPSDVAAGCVDIDECDVMHGPFGSCGQNATCTN 686
                         |.|...:..:.:.:.|:.:.|..|...     ||.         |:..:..:
 Frog  2543 LLRLISMSKPELVYAKKFSHAFFNLLDRGFNHYPPAVLQA-----ECQ---------GRGDSSFS 2593

  Fly   687 SAGGFTCACPPGFSGDPHSKCVDVDECRTGASKCGAGAECVNVPGGGYTCRCPGNTIADPDPSVR 751
            ....|           |.::...||.         |.||.                   ||.::.
 Frog  2594 VVRSF-----------PDTRLTQVDT---------AAAEV-------------------PDETIE 2619

  Fly   752 CVPIVSCSANEDCPG--------NSICDATKRCLCPEPNIGNDCRHPCEALNCGAHAQCMLANGQ 808
            .|.::...|.|:..|        |.:.|   .||. :.|.|..||                    
 Frog  2620 VVEVLGTPAPEEIVGKKTEKIIINKVAD---NCLL-DVNHGTACR-------------------- 2660

  Fly   809 AQCLCAPGYTGNSALAGGCNDIDECRANPCAEKAICSNTAGGYLCQCPGGSSGDPYREGCITSKT 873
                      |...:......||.|             :...|     ||..|:..|....|...
 Frog  2661 ----------GYQRMWYYIKSIDAC-------------SQFWY-----GGCDGNGNRFSSETECL 2697

  Fly   874 VGCSDANPCATGETCVQDSYTGNSVCICRQGYERNSENGQCQD-VDECSVQRGKPAC------GL 931
            ..||..:..|.||.    ......||..:|      |.|:|.| :.:.|..:||.||      | 
 Frog  2698 QTCSSKSKKANGEV----RSLKKDVCTMKQ------EEGKCADYILKWSYNQGKKACVQFWYGG- 2751

  Fly   932 NALCKNLPGSYECRCPQGHNGNPFIMCEICNTPECQCQS 970
                          |  |.|||.|...|.|   |..|.|
 Frog  2752 --------------C--GGNGNRFDTQEQC---EATCMS 2771

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpyNP_001260032.1 EGF_3 137..166 CDD:289699 8/20 (40%)
EGF_CA 212..247 CDD:238011 7/36 (19%)
EGF_CA 255..>286 CDD:214542 8/30 (27%)
EGF_CA 298..331 CDD:238011 4/32 (13%)
EGF_CA 338..373 CDD:238011 8/37 (22%)
EGF_CA 413..456 CDD:238011 13/56 (23%)
EGF_CA 457..490 CDD:238011 9/39 (23%)
EGF_CA 497..>529 CDD:214542 9/32 (28%)
EGF_CA 580..>612 CDD:214542 11/77 (14%)
EGF_3 676..702 CDD:289699 2/25 (8%)
EGF_CA 1022..1056 CDD:214542
EGF_CA 2227..2260 CDD:238011
EGF_CA 2393..>2422 CDD:214542
DUF4758 4088..4282 CDD:292572
DUF4696 4127..4678 CDD:292395
DUF4758 4275..4448 CDD:292572
DUF4758 4377..4574 CDD:292572
DUF4758 4581..4754 CDD:292572
DUF4758 4683..4847 CDD:292572
DUF4758 4785..4964 CDD:292572
DUF4696 4841..5385 CDD:292395
DUF4758 4887..5098 CDD:292572
DUF4758 5193..5371 CDD:292572
DUF4758 5294..5487 CDD:292572
DUF4758 5445..5650 CDD:292572
DUF4758 5700..5877 CDD:292572
DUF4696 5756..6396 CDD:292395
DUF4758 5802..5979 CDD:292572
DUF4758 5964..6171 CDD:292572
DUF4758 6181..6360 CDD:292572
DUF4696 6339..6999 CDD:292395
DUF4758 6662..6839 CDD:292572
DUF4758 6764..6941 CDD:292572
DUF4758 6866..7045 CDD:292572
DUF4758 6968..7179 CDD:292572
DUF4696 7024..7569 CDD:292395
DUF4758 7172..7383 CDD:292572
DUF4696 7330..7964 CDD:292395
DUF4758 7400..7587 CDD:292572
DUF4758 7538..7707 CDD:292572
DUF4758 7798..7979 CDD:292572
DUF4758 7946..8126 CDD:292572
YppG 18767..>18832 CDD:290883
Med25_SD1 18795..18955 CDD:288132
MISS 19026..19258 CDD:292450
ZP 22576..22811 CDD:214579
Zona_pellucida <22714..22810 CDD:278526
col6a5XP_012820988.2 vWFA 33..198 CDD:412136
VWA 237..410 CDD:395045
vWFA 431..590 CDD:412136
vWFA 632..797 CDD:412136
vWA_collagen 839..1000 CDD:238749
VWA 1026..1194 CDD:395045
VWA 1213..1385 CDD:395045
VWA 1404..1569 CDD:395045
Collagen 1835..1888 CDD:396114
Collagen 1868..1919 CDD:396114
Collagen 1929..1983 CDD:396114
Collagen 2013..2079 CDD:396114 24/106 (23%)
Collagen 2072..2129 CDD:396114 20/86 (23%)
VWA 2162..2307 CDD:395045 38/173 (22%)
vWFA_subfamily_ECM 2366..2544 CDD:238727 25/181 (14%)
Kunitz_BPTI 2649..2700 CDD:394972 16/99 (16%)
KU 2717..2770 CDD:238057 22/78 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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