DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17440 and Cxxc1

DIOPT Version :9

Sequence 1:NP_572555.1 Gene:CG17440 / 31879 FlyBaseID:FBgn0030120 Length:366 Species:Drosophila melanogaster
Sequence 2:XP_038952569.1 Gene:Cxxc1 / 291440 RGDID:1310755 Length:702 Species:Rattus norvegicus


Alignment Length:470 Identity:101/470 - (21%)
Similarity:164/470 - (34%) Gaps:217/470 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 YCICRSSDCSRFMIGCDGCEEWYHGDCIEITEKDAEHIKNYYCRRCKKENPELQTIFR-LVATER 103
            |||||..|.:.||||||.|.||:|||||.||||.|:.|:.:|||.|::::|:|:..:| ....||
  Rat    28 YCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECREKDPKLEIRYRHKKCRER 92

  Fly   104 AAASN---------------AASTSL-----NAPGVGPSGAAPAAAP------------------ 130
            ..:..               |:...|     :..|||...|..:|:|                  
  Rat    93 DGSERDGSEPRDEGGGRKRPASDPELQRRAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQ 157

  Fly   131 ----------------------------------------------------------------- 130
                                                                             
  Rat   158 QQQQQQQQQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYK 222

  Fly   131 -----VAPATTSQQAPPPTTAAAKRKNSSAQEPKESQPTQAGTKRDKAAPKTSNVQVSP------ 184
                 ::|.|.|:..|.|     :|...:.|:|::||  :.|..|:......|:|...|      
  Rat   223 YFPSSLSPVTPSEALPRP-----RRPPPTQQQPQQSQ--KLGRIREDEGTVLSSVVKEPPEATAT 280

  Fly   185 --------RAVSPEI-----------------------FLNPELQ-------------------- 198
                    .|:.|::                       ||:|.|:                    
  Rat   281 PEPLSDEDLALDPDLYQDFCAGAFDDHVPWMSDAEESPFLDPALRKRAVKVKHVKRREKKSEKKV 345

  Fly   199 ---------------------------------GIQQCHGPNCCSHARPQSKYCSDECGSNLAIE 230
                                             .:.||.||.|...|:|.||||||:||..||..
  Rat   346 MERKEERYKRHRQKQKHKDKWKHPERADAKDPASLPQCLGPGCVRAAQPGSKYCSDDCGMKLAAN 410

  Fly   231 RLFQILPQQMQEWNITPSRAAEETRKHLELNMDELVLKQQEQLEEFEKQRQQIQTQQKQYQEKQK 295
            |:::||||::|:|..:|..|.|..:|.||.      :::::|     ..|.::|..::::.|.:.
  Rat   411 RIYEILPQRIQQWQQSPCIAEEHGKKLLER------IRREQQ-----SARTRLQEMERRFHELEA 464

  Fly   296 LMLQQQPQQQQQQQE 310
            ::|:.:.|..::.:|
  Rat   465 IILRAKQQAVREDEE 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17440NP_572555.1 PHD_Cfp1 40..85 CDD:277028 29/44 (66%)
zf-CpG_bind_C 231..>278 CDD:289071 14/46 (30%)
Cxxc1XP_038952569.1 PHD_Cfp1 28..73 CDD:277028 29/44 (66%)
zf-CXXC 167..213 CDD:366873 0/45 (0%)
zf-CpG_bind_C 410..>566 CDD:403474 20/81 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 81 1.000 Domainoid score I8303
eggNOG 1 0.900 - - E1_KOG1632
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D351589at33208
OrthoFinder 1 1.000 - - FOG0003492
OrthoInspector 1 1.000 - - otm45525
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46174
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3950
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.970

Return to query results.
Submit another query.