DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17440 and set-26

DIOPT Version :9

Sequence 1:NP_572555.1 Gene:CG17440 / 31879 FlyBaseID:FBgn0030120 Length:366 Species:Drosophila melanogaster
Sequence 2:NP_001370101.1 Gene:set-26 / 178463 WormBaseID:WBGene00013106 Length:1645 Species:Caenorhabditis elegans


Alignment Length:402 Identity:72/402 - (17%)
Similarity:150/402 - (37%) Gaps:106/402 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KKTEEEIRREIA---REFDLPER----------KSKIATILKQKDREYCICR------------- 44
            ::.|||:|||.|   ::.|..|:          |.|     |.|:||....|             
 Worm  1121 RRLEEEVRRERAAKTKQMDEAEKARLEAEKAAEKEK-----KAKEREEAKERKKMEVEASAAAAP 1180

  Fly    45 ---SSDCSRFMIGCDGCEEWYHGDCIEITEKDAEHIKNYYCRRCKKENPELQTIFRLVATERAAA 106
               :|..:|........||.:.....|...|:|.       ||.|...|.:     |.|...||.
 Worm  1181 ESSNSITAREERRIQQAEEMFRRQEEEGKRKEAR-------RRSKSVTPGV-----LEAAGTAAR 1233

  Fly   107 SNAASTSLNAPGVGPSGAAPAAAPVAPATTSQQAPPPTTAAAKRKNSSAQEPKESQP-------- 163
            .:|...|:.||...|..:..:.:.....:||..| .||...||.|...:..|.:|:|        
 Worm  1234 EDAPEASIPAPAPSPPASRRSVSRTTQPSTSSFA-TPTEPPAKNKRMRSVVPPKSEPASSAKRVR 1297

  Fly   164 -TQAGTKRDKAAPKTSNVQVSPRAVSPEIFLNPELQGIQQCHGPNCCSHARPQSKYCSDECGSNL 227
             |...|.:|..|...|..:.|                        ..:...|.:|...:...::.
 Worm  1298 ATTVATPKDTTASNDSRKRKS------------------------SATGKTPVAKRSKNVVPTSF 1338

  Fly   228 AIERLFQILPQQMQEWNITPSRAAEETRKHLELNMDELVLKQQE------QLEEFEKQRQQIQTQ 286
            .:..:.:.|.:|.::..:            ||:.:.:.::|::.      |..:|.:.|.||   
 Worm  1339 GLALIEKELREQARDSTV------------LEMILPDYIMKEKRSGLLAGQSPDFSEVRAQI--- 1388

  Fly   287 QKQYQEKQKLMLQQQPQQQQQQQELQQQQELQQQQEQEQQQLLQQLHLKPHHVQQLQLQMQLLQQ 351
                 |::..|.::..:::.:::.:::.:|.::::.:::.:...:....|...:.::..::.:::
 Worm  1389 -----EEENRMKERFTKREAKKKAVEKAKEKEKKEHRKEPKKANEPGPAPKSEKAVEKAVEKVEK 1448

  Fly   352 QRQLLQQQQHKP 363
            :.:..|:...||
 Worm  1449 KPKSPQKPPAKP 1460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17440NP_572555.1 PHD_Cfp1 40..85 CDD:277028 9/60 (15%)
zf-CpG_bind_C 231..>278 CDD:289071 7/52 (13%)
set-26NP_001370101.1 PRK03427 <9..>135 CDD:235124
PHD_Bye1p_SIZ1_like 796..839 CDD:277045
SET_SETD5-like 935..1067 CDD:380927
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6159
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

Return to query results.
Submit another query.