DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17754 and AT1G55270

DIOPT Version :9

Sequence 1:NP_572549.2 Gene:CG17754 / 31873 FlyBaseID:FBgn0030114 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_564684.1 Gene:AT1G55270 / 841972 AraportID:AT1G55270 Length:434 Species:Arabidopsis thaliana


Alignment Length:367 Identity:93/367 - (25%)
Similarity:130/367 - (35%) Gaps:92/367 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 IMDHVENVCNANECQQLVMEAFKW------HLMPE------RRSRIATERT---------TPRKS 319
            ::|.|...|..:...:.|:||.|:      .:.|:      ||.....|||         .|...
plant    22 LVDSVSCYCRVDSGLKTVVEARKFVPGSKLCIQPDINPNAHRRKNSKRERTRIQPPLLPGLPDDL 86

  Fly   320 TVGRLLAVGGMDAHKGAISIESYCPRLDKWTPWKHMTGRRLQFGAAVMEDKLILV--GGRDGLKT 382
            .|..|:.|...:..|    :...|.|..:.........:|...|   |.::.:.|  ..|||..:
plant    87 AVACLIRVPRAEHRK----LRLVCKRWYRLASGNFFYSQRKLLG---MSEEWVYVFKRDRDGKIS 144

  Fly   383 LNTVESLDLNTMAWAPLNAMATPRH-----GLGVAVLEG-PLYAVGGHDGWSYLNTVERWDPI-- 439
            .||.:.:   :..|.||..:  ||.     |.|.|||.| .||..||.            ||:  
plant   145 WNTFDPI---SQLWQPLPPV--PREYSEAVGFGCAVLSGCHLYLFGGK------------DPLRG 192

  Fly   440 ---------ART--WSYVAPMSSMRSTAGVAVLGGRLYAVGGRDGSVCH------RSIECYDPHT 487
                     |||  |.....|...|...|..|:...||..||.    |.      ||.|.|||:.
plant   193 SMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGE----CEGIQRTLRSAEVYDPNK 253

  Fly   488 NKWSLLAPMNRRRGG-VGVTV-ANGFLYALGGHDCPASNPMVCRTETVERYDPATDTWTLICSLA 550
            |:||.:|.|:..... :||.. ...||..||.|....|          |.|||..::|:.:....
plant   254 NRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMS----------EAYDPEVNSWSPVSDGM 308

  Fly   551 LGRDAIGCALLGDRLIVVGGYDGNHALKSVEEYDPVRNGWNE 592
            :......|..|..||.   |.|.....| :..:|...:.||:
plant   309 VAGWRNPCTSLNGRLY---GLDCRDGCK-LRVFDESTDSWNK 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17754NP_572549.2 BTB 70..170 CDD:279045
PHA03098 71..591 CDD:222983 91/364 (25%)
BACK 179..281 CDD:285009 1/4 (25%)
Kelch 323..369 CDD:128874 8/45 (18%)
KELCH repeat 359..402 CDD:276965 12/44 (27%)
Kelch 370..416 CDD:128874 16/52 (31%)
KELCH repeat 406..449 CDD:276965 17/61 (28%)
Kelch 418..463 CDD:128874 14/57 (25%)
KELCH repeat 453..497 CDD:276965 18/49 (37%)
Kelch 464..510 CDD:128874 18/53 (34%)
Kelch_1 499..546 CDD:279660 13/48 (27%)
KELCH repeat 500..549 CDD:276965 13/50 (26%)
KELCH repeat 553..596 CDD:276965 10/40 (25%)
Kelch 564..610 CDD:128874 8/29 (28%)
AT1G55270NP_564684.1 F-box 77..119 CDD:395521 7/45 (16%)
KELCH repeat 170..213 CDD:276965 16/54 (30%)
PHA03098 <171..356 CDD:222983 58/206 (28%)
KELCH repeat 217..263 CDD:276965 18/49 (37%)
KELCH repeat 266..306 CDD:276965 13/49 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.960

Return to query results.
Submit another query.