DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17754 and AT1G19930

DIOPT Version :10

Sequence 1:NP_572549.2 Gene:CG17754 / 31873 FlyBaseID:FBgn0030114 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_173422.1 Gene:AT1G19930 / 838582 AraportID:AT1G19930 Length:344 Species:Arabidopsis thaliana


Alignment Length:175 Identity:35/175 - (20%)
Similarity:55/175 - (31%) Gaps:52/175 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 PRHGLGVAVLEGPLYAVGGHDGWSYLNTVERWDPIARTWSYVAPMSSMRSTAGVAVLGGRLYAVG 469
            |.|...:..:...:|.:||....|..::|...|..:.||.....|...|.....::|.|::|..|
plant   110 PLHRSSLVAVGSNIYNIGGSISQSQSSSVSILDCWSHTWLEGPSMQVEREYPSASLLDGKIYVTG 174

  Fly   470 GRDGSVCHRSIE-CYDPHTNKWSLLAPMNRRRGGVGVTVANGFLYALGGHDCPASNPMVCR---- 529
            |     |..:.. |.|...|                 .|.:|.|::.||:...|.||...|    
plant   175 G-----CRLTFHGCGDQTDN-----------------VVVDGKLHSCGGYKGVAYNPNDGRWDSL 217

  Fly   530 -------------------------TETVERYDPATDTWTLICSL 549
                                     .|.::.||....:|..:..|
plant   218 GSEMNLGLKWSSSCVIENVIYYYYHNENIKWYDTKVRSWRTLNGL 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17754NP_572549.2 PHA03098 71..591 CDD:222983 35/175 (20%)
KELCH repeat 359..402 CDD:276965
KELCH repeat 406..449 CDD:276965 9/42 (21%)
KELCH repeat 453..497 CDD:276965 10/44 (23%)
KELCH repeat 500..549 CDD:276965 13/77 (17%)
KELCH repeat 553..596 CDD:276965
AT1G19930NP_173422.1 F-box_AtAFR-like 10..54 CDD:438923
NanM <145..282 CDD:442289 27/140 (19%)
KELCH repeat 225..264 CDD:276965 5/38 (13%)
Blue background indicates that the domain is not in the aligned region.

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