DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17754 and AT4G38940

DIOPT Version :10

Sequence 1:NP_572549.2 Gene:CG17754 / 31873 FlyBaseID:FBgn0030114 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_195605.1 Gene:AT4G38940 / 830049 AraportID:AT4G38940 Length:370 Species:Arabidopsis thaliana


Alignment Length:212 Identity:47/212 - (22%)
Similarity:71/212 - (33%) Gaps:46/212 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 PRHGLGVAVLEGPLYAVGGHDGWSYLNTVERWDPIARTWSYVAPMSSMRSTAGVAVLGGRLYAVG 469
            |.||..|.: ...::.:||...|...::|...|....|...:..|....:.....::..::|.:|
plant   120 PMHGSYVGI-GSNIFVMGGFCNWKITSSVSLIDCRTHTAQTLPNMPKAVAFPVTELIDRKIYVIG 183

  Fly   470 GRDG----SVCHRSIECYDPHTNKWSLLAPMNRRRG--GVGVTVANGFLYALGGHDCPASNPMVC 528
            |.|.    ....|.:..||..|..|.|.|..:...|  .....|..|.:|....|     |..||
plant   184 GSDTLSPMKSPSRIMMVYDTDTEMWQLRARPDWEAGKKWFSSVVIGGKIYMRTYH-----NSFVC 243

  Fly   529 RTETVERYDPATDTWTLICSLALGRDAI-------GCALLGDRLIVVGGYDGNHALKSVEEYDPV 586
                    || .||       :..||.:       ...::.|   |:..||...  ..:..|||.
plant   244 --------DP-NDT-------SCDRDEVLHSKEWWSACVIDD---VLYYYDVRE--NCLRAYDPK 287

  Fly   587 RNGW------NELAPMA 597
            :..|      ..|.|:|
plant   288 QRAWGVVKGFEGLLPVA 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17754NP_572549.2 PHA03098 71..591 CDD:222983 44/204 (22%)
KELCH repeat 359..402 CDD:276965
KELCH repeat 406..449 CDD:276965 9/42 (21%)
KELCH repeat 453..497 CDD:276965 11/47 (23%)
KELCH repeat 500..549 CDD:276965 12/50 (24%)
KELCH repeat 553..596 CDD:276965 11/55 (20%)
AT4G38940NP_195605.1 F-box_AtAFR-like 20..64 CDD:438923
NanM 115..320 CDD:442289 47/212 (22%)
KELCH repeat 123..164 CDD:276965 8/41 (20%)
KELCH repeat 167..212 CDD:276965 10/44 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.