DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17754 and AT4G33900

DIOPT Version :9

Sequence 1:NP_572549.2 Gene:CG17754 / 31873 FlyBaseID:FBgn0030114 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_567939.1 Gene:AT4G33900 / 829533 AraportID:AT4G33900 Length:379 Species:Arabidopsis thaliana


Alignment Length:204 Identity:43/204 - (21%)
Similarity:74/204 - (36%) Gaps:35/204 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   363 GAAVMEDKLILVGG----------RDGLKTLNTVES---LDLNTMAWAPLNAMATPRHGLGVAVL 414
            |..|:..::..:||          ..|.||.|.:.|   :|..:..|....:|...|.......|
plant   109 GFVVVGHEIYAIGGGSENKNASINATGSKTYNALSSVMVMDSRSHTWREAPSMRVARVFPSACTL 173

  Fly   415 EGPLYAVGGHDGWSYLNTVERWDPIARTWSYVAPMSS--MRSTAGVAVLGGRLYAVGGRDGSVCH 477
            :|.:|..||.:..:.:|.:|.:|...:||.::...|.  .:.:..:::...|...||.|:..|  
plant   174 DGRIYVTGGCENLNSMNWMEIFDTKTQTWEFLQIPSEEVCKGSEYLSISYQRTVYVGSREKDV-- 236

  Fly   478 RSIECYDPHTNKWSLLAPMNRRRGGVGVTVANGFLYALGGHDCPASNPMV--CRTETVERYDPAT 540
                .|..|..||.          |..:.:.:|  ::|....|.....:.  |....|..||...
plant   237 ----TYKMHKGKWR----------GADICLNHG--WSLDPSSCCVIENVFYRCSLGDVRWYDLKK 285

  Fly   541 DTWTLICSL 549
            ..|..:..|
plant   286 REWAALKGL 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17754NP_572549.2 BTB 70..170 CDD:279045
PHA03098 71..591 CDD:222983 43/204 (21%)
BACK 179..281 CDD:285009
Kelch 323..369 CDD:128874 2/5 (40%)
KELCH repeat 359..402 CDD:276965 11/51 (22%)
Kelch 370..416 CDD:128874 12/58 (21%)
KELCH repeat 406..449 CDD:276965 11/42 (26%)
Kelch 418..463 CDD:128874 9/46 (20%)
KELCH repeat 453..497 CDD:276965 9/43 (21%)
Kelch 464..510 CDD:128874 10/45 (22%)
Kelch_1 499..546 CDD:279660 9/48 (19%)
KELCH repeat 500..549 CDD:276965 9/50 (18%)
KELCH repeat 553..596 CDD:276965
Kelch 564..610 CDD:128874
AT4G33900NP_567939.1 F-box 11..54 CDD:395521
PHA03098 <88..288 CDD:222983 41/196 (21%)
KELCH repeat 109..162 CDD:276965 11/52 (21%)
Kelch_1 164..205 CDD:396078 11/40 (28%)
KELCH repeat 165..205 CDD:276965 11/39 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.