DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17754 and SKIP6

DIOPT Version :9

Sequence 1:NP_572549.2 Gene:CG17754 / 31873 FlyBaseID:FBgn0030114 Length:654 Species:Drosophila melanogaster
Sequence 2:NP_565522.1 Gene:SKIP6 / 816731 AraportID:AT2G21950 Length:372 Species:Arabidopsis thaliana


Alignment Length:277 Identity:66/277 - (23%)
Similarity:107/277 - (38%) Gaps:63/277 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   363 GAA--VMEDKLILVGGRDGLKTLNTVESLDLNTMAWAPLNAMATPRHGLGVAVLEGPLYAVGG-- 423
            |:|  |::.::.::||.......::|..||.....|..::.|...|......|::|.:|.:||  
plant   118 GSAYVVVDSEIYVIGGSIRDVPSSSVWVLDCRFHTWRRVSNMRVGREFAAAGVIDGKIYVIGGCV 182

  Fly   424 HDGWS-YLNTVERWDPIARTWSYVA-PMSSMRS--TAGVAVLGGRLYAVGGRDGSVCHRSIECYD 484
            .|.|: .:|..|.:|...:||..|| |...:|.  ....||:.|::||:..|:|.|       |:
plant   183 VDNWARSINWAEMFDIKTQTWEPVASPGMEVREKWMHASAVMEGKVYAMADRNGVV-------YE 240

  Fly   485 PHTNKWSLLAPMNRRRGGVGVTVANGFLYALGGHDCPASNPMVC--RTETVERYDPATDTW---- 543
            |...||.    |..:|..:|          ..|..|...|.:.|  ....:..|||....|    
plant   241 PKEKKWE----MPEKRLDLG----------WRGRACVIENILYCYDYLGKIRGYDPKERIWRELK 291

  Fly   544 ------TLICSLALGRDAIGCALLGDRLIVV-GGYDGNHALKSVE----EYDPVRNG----WNEL 593
                  ..:|...:       |..|.:|.|: .|..|:...:.:|    |.|..|.|    |.::
plant   292 GVESLPKFLCGATM-------ANRGGKLTVLWEGKAGSGGSRRMEIWCAEIDVGRRGEREIWGKI 349

  Fly   594 APMAFARAGACVVAIPN 610
                  .....|:.:||
plant   350 ------EWSGTVLTVPN 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17754NP_572549.2 BTB 70..170 CDD:279045
PHA03098 71..591 CDD:222983 62/256 (24%)
BACK 179..281 CDD:285009
Kelch 323..369 CDD:128874 3/7 (43%)
KELCH repeat 359..402 CDD:276965 9/40 (23%)
Kelch 370..416 CDD:128874 9/45 (20%)
KELCH repeat 406..449 CDD:276965 15/46 (33%)
Kelch 418..463 CDD:128874 16/50 (32%)
KELCH repeat 453..497 CDD:276965 13/45 (29%)
Kelch 464..510 CDD:128874 12/45 (27%)
Kelch_1 499..546 CDD:279660 10/58 (17%)
KELCH repeat 500..549 CDD:276965 11/60 (18%)
KELCH repeat 553..596 CDD:276965 12/51 (24%)
Kelch 564..610 CDD:128874 11/54 (20%)
SKIP6NP_565522.1 F-box 21..64 CDD:279040
Kelch_1 117..160 CDD:279660 9/41 (22%)
KELCH repeat 122..159 CDD:276965 7/36 (19%)
muta_rot_YjhT 153..>352 CDD:274641 55/232 (24%)
KELCH repeat 163..212 CDD:276965 16/48 (33%)
Kelch_1 163..210 CDD:279660 15/46 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.960

Return to query results.
Submit another query.