DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gba1b and gba-3

DIOPT Version :9

Sequence 1:NP_001097888.1 Gene:Gba1b / 318721 FlyBaseID:FBgn0051414 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001255965.1 Gene:gba-3 / 178535 WormBaseID:WBGene00008706 Length:525 Species:Caenorhabditis elegans


Alignment Length:551 Identity:187/551 - (33%)
Similarity:270/551 - (49%) Gaps:92/551 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VCVCNSTYCDYLEPPQLTDISQ--IVVISSSKDGLRFKKTTGDLSKKKPITIDDKQFTDENFKAD 101
            |||||:|:||.:||  :.:|::  .:|..||.||.|.|:.:..:.:|                  
 Worm    41 VCVCNATFCDEIEP--IGEIAEGKAIVYRSSLDGDRLKRMSMKMKEK------------------ 85

  Fly   102 AIVVDQERAWLQLANIPQSLFINASIKTYRIFVKREQSFQNVSIFGGAFTGTVSYLLKELPVELQ 166
                               |..|.|:.. .|.:...:.|||:..||||||.:.......|...||
 Worm    86 -------------------LRKNESVNV-TITIDASERFQNIFGFGGAFTDSAGDQFVSLSETLQ 130

  Fly   167 DHVYRSYFHPVGIAYNTIRMSIGGSDFDMEPWAYNELPLHDP-KLSNFTELDPRDLQ-KVEQLKR 229
            :::..|||...|:.||..|:.|...||....::|::  :||. :|.:|. |...||: |:..:| 
 Worm   131 NYIVDSYFGKNGLEYNIGRVPIASCDFSTHEYSYDD--VHDDFELKHFA-LPDEDLKLKIPFIK- 191

  Fly   230 LKIIGKVD-SLKIMGAAWSAPTWMKSNNRWTGFGQLKSE--YYQTWALYHLKFLELMRSKNMPIW 291
             |.|.|.: ::::..:.||||.|||...|..|.|.::::  .||.:|.|..||.|...|..:..|
 Worm   192 -KAIEKTEGNIQLFASPWSAPGWMKVTGRMRGGGAMRNDKRVYQAYADYFFKFFEAYSSHAITFW 255

  Fly   292 AISTGNEPLNGVIGFFFVHFMSMGWTPWQ--------QAIWLNDNLGPTIRNSAES---KVLIFG 345
            .::..|||..|.         .|.|. ||        ...:|...|||.::.:..:   ||::. 
 Worm   256 GLTIQNEPSTGA---------DMAWR-WQTMNYTAETMRDFLKKYLGPKLKENKLTETLKVMVL- 309

  Fly   346 NDDQRYTYPTW----FRKMRSSRNNSLNYLDGLAVHWYWDELIGPQLIDQAHTDMPNKLLLNTES 406
             ||.|...|.|    |....:::     |.||:|||||.:......|:|......|.|.:..||:
 Worm   310 -DDGRGLLPGWADTIFNDPEATK-----YADGVAVHWYGNLYSPAVLLDITQRHHPTKFIFGTEA 368

  Fly   407 CIGDKPWQTHGPELGSWQRGESYMRAYTQDLTHNFNGWLDWNLVLDEQGGPNYVKNFVDAPIIVN 471
            |.|  .:..|||.:|.|.|.|||......||.|:..||.||||.|||.||||:..|.||:|||||
 Worm   369 CAG--YFGHHGPIMGDWFRAESYADDIITDLNHHVTGWTDWNLCLDETGGPNWAYNVVDSPIIVN 431

  Fly   472 ATSRSEIYKQPIFYAIGHFSKFLPPDSVRIETRIE-NQSNPFTQLSVVGFQRPDGSVALIIYNGQ 535
            .|:: |.||||:|||:||||||||..|.|:.|:|| |.:...|.:.:.|.:|    ..:|:....
 Worm   432 RTAQ-EFYKQPMFYALGHFSKFLPRGSTRVFTKIEGNLAVSATSVVIEGGRR----ATVILSKAS 491

  Fly   536 NLPVDVTLDDSQRGAIQLRLPPRSWHTVLYK 566
            |..:...:|.|...:|.|.|||||.|||::|
 Worm   492 NSLLTRIVDSSTGFSIVLNLPPRSIHTVIWK 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1bNP_001097888.1 Glyco_hydro_30 28..559 CDD:304972 181/542 (33%)
gba-3NP_001255965.1 Glyco_hydro_30 28..521 CDD:304972 186/548 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166002
Domainoid 1 1.000 225 1.000 Domainoid score I1442
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I1794
Isobase 1 0.950 - 0 Normalized mean entropy S4252
OMA 1 1.010 - - QHG62715
OrthoDB 1 1.010 - - D206521at33208
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - mtm4803
orthoMCL 1 0.900 - - OOG6_102859
Panther 1 1.100 - - LDO PTHR11069
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3226
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.890

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