DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gba1b and gba-4

DIOPT Version :9

Sequence 1:NP_001097888.1 Gene:Gba1b / 318721 FlyBaseID:FBgn0051414 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_500785.1 Gene:gba-4 / 177314 WormBaseID:WBGene00021160 Length:519 Species:Caenorhabditis elegans


Alignment Length:564 Identity:183/564 - (32%)
Similarity:270/564 - (47%) Gaps:93/564 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LPCDLRETSHGSVCVCNSTYCDYLEPPQLTDISQIVVISSSKDGLR-----FKKTTGDLSKKKPI 86
            |||...:..:|.||.||:||||.:||.......:.||.::|::|.|     .|.||...:|.|  
 Worm    25 LPCSEVKKEYGIVCRCNATYCDTIEPLGTVTSGKAVVYTTSRNGKRMNRSELKHTTSSTAKTK-- 87

  Fly    87 TIDDKQFTDENFKADAIVVDQERAWLQLANIPQSLFINASIKTYRIFVKREQSFQNVSIFGGAFT 151
                                                         ::|...||||.|..||.|||
 Worm    88 ---------------------------------------------VYVNTTQSFQPVMGFGAAFT 107

  Fly   152 GTVSYLLKELPVELQDHVYRSYFHPVGIAYNTIRMSIGGSDFDMEPWAYNELPLHDPKLSNFTEL 216
            ......:|.||..:||.:.:.||...|:.|...|:.:..:||....::|:::.. |..|.|| .|
 Worm   108 DAAGINMKMLPQTMQDQIIQQYFSDDGLGYVFGRVPMASTDFSTHEYSYDDVKF-DFDLKNF-NL 170

  Fly   217 DPRDLQ-KVEQLKRLKII--GKVDSLKIMGAAWSAPTWMKSNNRWTGFGQL----KSEYYQTWAL 274
            ...||| |:..:|:....  ||   ||:....||:|.|||::.|..|.|:|    ..:||||||.
 Worm   171 TVEDLQYKIPFIKKAMTASGGK---LKLFATPWSSPGWMKTSGRMVGAGELLGDQNGKYYQTWAQ 232

  Fly   275 YHLKFLELMRSKNMPIWAISTGNEPLNGVIGFFFVHFMSMGWTPWQ--------QAIWLNDNLGP 331
            |.:||.|...::.:..|:::..|||..|:...         | .||        :..::...|||
 Worm   233 YFVKFFEAYHAQGIDFWSLTPQNEPTTGIDPL---------W-KWQTLFFDASMERNFIKKLLGP 287

  Fly   332 TIRNSAESKVL-IFGNDDQRYTYPTWFRKMRSSRNNSLNYLDGLAVHWYWDELIGPQLIDQAHTD 395
            .:.:|..:|.| |..|||||...|.|...:.:. ..:..|:.|:|:|||.|.:....::.:.|..
 Worm   288 ALASSPVTKNLKIMINDDQRINLPHWPNVILTD-PTAAQYVHGIAIHWYEDFIDPATVLTETHEK 351

  Fly   396 MPNKLLLNTESCIGDKPWQTHGPELGSWQRGESYMRAYTQDLTHNFNGWLDWNLVLDEQGGPNYV 460
            .|:..||.||:|.|..|  ..||:||||.|.|.|.....:|:.:...||:|||.:||.|||||..
 Worm   352 FPDYFLLATEACAGYFP--ADGPKLGSWSRAEQYANDLIKDMGNWVGGWVDWNYILDLQGGPNLA 414

  Fly   461 KNFVDAPIIVNATSRSEIYKQPIFYAIGHFSKFLPPDSVRIETRIENQSNPFTQLSVVGFQRPDG 525
            |||||:.||||||:: |.|||||::.:..||||:.|.::|:...|..:|.....||   |...||
 Worm   415 KNFVDSTIIVNATAQ-EYYKQPIWHVMAQFSKFVKPGAIRVGINIIEKSVDVEGLS---FLNQDG 475

  Fly   526 SVALIIYN-GQNLPVDVTLDDSQRGAI--QLRLPPRSWHTVLYK 566
            :..:::.| .:.|..||.:.|.....:  .|.:.|.|..|::||
 Worm   476 TKTVVLLNKNEVLSFDVAISDVSAPNVIYDLTIQPNSLITIVYK 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1bNP_001097888.1 Glyco_hydro_30 28..559 CDD:304972 178/554 (32%)
gba-4NP_500785.1 Glyco_hydro_30 26..516 CDD:304972 179/558 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166000
Domainoid 1 1.000 225 1.000 Domainoid score I1442
eggNOG 1 0.900 - - E1_COG5520
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I1794
Isobase 1 0.950 - 0 Normalized mean entropy S4252
OMA 1 1.010 - - QHG62715
OrthoDB 1 1.010 - - D206521at33208
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - mtm4803
orthoMCL 1 0.900 - - OOG6_102859
Panther 1 1.100 - - O PTHR11069
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3226
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.750

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