DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gba1b and gba-1

DIOPT Version :9

Sequence 1:NP_001097888.1 Gene:Gba1b / 318721 FlyBaseID:FBgn0051414 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001040750.1 Gene:gba-1 / 173574 WormBaseID:WBGene00016335 Length:523 Species:Caenorhabditis elegans


Alignment Length:582 Identity:162/582 - (27%)
Similarity:249/582 - (42%) Gaps:103/582 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FLTTVIAISAGAPDWQLPCDLRETSHGSVCVCNSTYCDYLEPPQLTDISQIVVISSSKDGLRFKK 75
            ||......|..|.|    |..:....|:||||:...||.:.|..:| :.|..:.::|..|.|..:
 Worm    12 FLAVFGVDSVRAAD----CTEKTFKTGTVCVCSLDSCDEIPPLDIT-MGQAALYTTSHTGARLHR 71

  Fly    76 TTGDLSKKKPITIDDKQFTDENFKADAI-VVDQERAWLQLANIPQSLFINASIKTYRIFVKREQS 139
                                     |.| ..|.|                 ...|..:.:...:.
 Worm    72 -------------------------DVIYATDTE-----------------PFGTLHMTIDSSKK 94

  Fly   140 FQNVSIFGGAFTGTVSYLLKELPVELQDHVYRSYFHPVGIAYNTIRMSIGGSDFDMEPWAYNELP 204
            :|.:..||..|:......||.||.:|.|.:.:.||...|:.....|:.|..:||....::||:: 
 Worm    95 YQTIQGFGSTFSDASGANLKSLPDKLSDLIMKQYFSDTGLNLQFGRVPIASTDFSGRVYSYNDV- 158

  Fly   205 LHDPKLSNFTELDPRDLQ-KVEQLKRLKIIGKVDSLKIMGAAWSAPTWMKSNNRWTGFGQLKSE- 267
            .:|..:.|| .|...|.| |:..:|..:...  .:||:..|.|:||.|:|:....||.|.|..: 
 Worm   159 ANDYSMQNF-NLTKEDFQWKIPYIKNAQKYN--PNLKLFAAPWAAPGWLKTTKEMTGPGALNGKA 220

  Fly   268 ---YYQTWALYHLKFLELMRSKNMPIWAISTGNEPL------NGVIGFFFVHFMSMGWTPWQQAI 323
               |:|.:|.|.::|||......:..|.:||.|:|.      |.:....|        |...|..
 Worm   221 GDNYHQAYAKYFVRFLEEYGKSGISFWGLSTQNQPTLGSDKKNKIQSTLF--------TAETQRD 277

  Fly   324 WLNDNLGPTIRNSA---ESKVLIFGNDDQRYTYPTWFRKMRSSRNNSLNYLDGLAVHWYWDELIG 385
            ::..:|||.:..|:   :.|:||.  ||.|...|.|...:.:.. ::..|:.|:.||.|.|....
 Worm   278 FIKTDLGPALAASSSGKDVKLLIL--DDNRGNLPKWADTVLNDM-DAAKYVGGIGVHAYQDGETD 339

  Fly   386 PQLIDQAHTDMPNKLLLNTESCIGDKPWQTHGPELGSWQRGESYMRAYTQDLTHNFN----GWLD 446
            ..| |:.|...||..:|.||:..|.....|| .:.|:|.|...    ...|:..|.|    ||.:
 Worm   340 NHL-DETHKKHPNFFILGTEASEGYGSKDTH-VDYGNWDRAAD----TASDILDNMNNWMTGWTE 398

  Fly   447 WNLVLDEQGGPNYVKNFVDAPIIVNATSRSEIYKQPIFYAIGHFSKFLPPDSVRIE---TRIENQ 508
            .||:||..|||::|.::.|||:|. ..:.::.||||:||||.|||.|:.|.:|||:   ..||  
 Worm   399 RNLILDALGGPSWVSDYTDAPVIA-FPAMAQFYKQPMFYAIAHFSHFIKPGAVRIDHSLNVIE-- 460

  Fly   509 SNPFTQLSVVGFQRPDGSVALIIYNGQNL---PVDVTLDDS--QRGAIQLRLPPRSWHTVLY 565
                .::....|..||||..:::.|..:|   ...|.:.|:  .|......||.|: .|.||
 Worm   461 ----LEVETTAFLNPDGSKVIVMLNKGSLVSTEHTVVVQDAADSRNHYHFTLPHRA-ITTLY 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1bNP_001097888.1 Glyco_hydro_30 28..559 CDD:304972 153/557 (27%)
gba-1NP_001040750.1 Glyco_hydro_30 23..519 CDD:110998 159/571 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166003
Domainoid 1 1.000 225 1.000 Domainoid score I1442
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I1794
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62715
OrthoDB 1 1.010 - - D206521at33208
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - mtm4803
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.910

Return to query results.
Submit another query.