DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42726 and Zkscan4

DIOPT Version :10

Sequence 1:NP_732017.3 Gene:CG42726 / 318709 FlyBaseID:FBgn0261679 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001034204.1 Gene:Zkscan4 / 544922 MGIID:3649412 Length:480 Species:Mus musculus


Alignment Length:243 Identity:66/243 - (27%)
Similarity:100/243 - (41%) Gaps:33/243 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 ETQETQARTSADKRIIVTDKGYHCTVCNKDF--RSRTQQYYHLTCGNDLLKKFNCKECGRRFATS 113
            |..|.:.:....::.....:.:.|..|.|.|  .|...::..:..|.   |.:.|::||:.|..|
Mouse   232 EASEQEGKLQTAQKSATGTRRHFCCECGKSFAQSSGLTKHKRIHTGE---KPYECEDCGKTFIGS 293

  Fly   114 SHLKYHLMSHEKQSKHSCSVCHKSFKQPIVLQRHMLTHNQEK-HLCPICQKVFRRKSSLASHLAI 177
            |.|..|...|..:..:.|..|.|.|.....|.:|..||..|| :.|..|.|.|.:..||..|..|
Mouse   294 SALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHKI 358

  Fly   178 HSDLGLQFKCELCSKHFQNKANLNQHLRKH-DKNNIR-------------------------HMC 216
            |:. ...|:|.||.|.|:..::|.:|.|.| ||...:                         :.|
Mouse   359 HTG-EKPFQCNLCGKAFRRSSHLLRHQRIHGDKTAPKPLHGEAWEGQSPVAGQGEDVEAPETYQC 422

  Fly   217 KVCQKSFLRQTTLRLHMKRHSNRERQSCSLCGKSYNDPDALGRHLRQH 264
            ..|::||.|:.:|..|.|.|:..:...|..|||.:.....|.:|.|.|
Mouse   423 SECERSFTRRRSLLEHKKIHTGEKPYQCDACGKGFTRTSYLAQHQRSH 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42726NP_732017.3 C2H2 Zn finger 74..94 CDD:275368 5/21 (24%)
C2H2 Zn finger 103..123 CDD:275368 8/19 (42%)
COG5048 <112..288 CDD:227381 53/180 (29%)
C2H2 Zn finger 131..151 CDD:275368 6/19 (32%)
C2H2 Zn finger 158..178 CDD:275368 7/19 (37%)
C2H2 Zn finger 187..207 CDD:275368 8/19 (42%)
C2H2 Zn finger 216..236 CDD:275368 8/19 (42%)
C2H2 Zn finger 244..264 CDD:275368 7/19 (37%)
C2H2 Zn finger 272..290 CDD:275368
Zkscan4NP_001034204.1 SCAN 47..155 CDD:128708
zf-C2H2 253..275 CDD:395048 5/21 (24%)
C2H2 Zn finger 255..275 CDD:275368 5/19 (26%)
zf-H2C2_2 268..290 CDD:463886 5/24 (21%)
zf-C2H2 281..303 CDD:395048 8/21 (38%)
C2H2 Zn finger 283..303 CDD:275368 8/19 (42%)
COG5048 <307..471 CDD:227381 48/165 (29%)
C2H2 Zn finger 311..331 CDD:275368 6/19 (32%)
C2H2 Zn finger 339..359 CDD:275368 7/19 (37%)
C2H2 Zn finger 367..387 CDD:275368 8/19 (42%)
C2H2 Zn finger 422..442 CDD:275368 8/19 (42%)
C2H2 Zn finger 450..470 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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