DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42726 and Zkscan4

DIOPT Version :9

Sequence 1:NP_732017.3 Gene:CG42726 / 318709 FlyBaseID:FBgn0261679 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001034204.1 Gene:Zkscan4 / 544922 MGIID:3649412 Length:480 Species:Mus musculus


Alignment Length:243 Identity:66/243 - (27%)
Similarity:100/243 - (41%) Gaps:33/243 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 ETQETQARTSADKRIIVTDKGYHCTVCNKDF--RSRTQQYYHLTCGNDLLKKFNCKECGRRFATS 113
            |..|.:.:....::.....:.:.|..|.|.|  .|...::..:..|.   |.:.|::||:.|..|
Mouse   232 EASEQEGKLQTAQKSATGTRRHFCCECGKSFAQSSGLTKHKRIHTGE---KPYECEDCGKTFIGS 293

  Fly   114 SHLKYHLMSHEKQSKHSCSVCHKSFKQPIVLQRHMLTHNQEK-HLCPICQKVFRRKSSLASHLAI 177
            |.|..|...|..:..:.|..|.|.|.....|.:|..||..|| :.|..|.|.|.:..||..|..|
Mouse   294 SALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHKI 358

  Fly   178 HSDLGLQFKCELCSKHFQNKANLNQHLRKH-DKNNIR-------------------------HMC 216
            |:. ...|:|.||.|.|:..::|.:|.|.| ||...:                         :.|
Mouse   359 HTG-EKPFQCNLCGKAFRRSSHLLRHQRIHGDKTAPKPLHGEAWEGQSPVAGQGEDVEAPETYQC 422

  Fly   217 KVCQKSFLRQTTLRLHMKRHSNRERQSCSLCGKSYNDPDALGRHLRQH 264
            ..|::||.|:.:|..|.|.|:..:...|..|||.:.....|.:|.|.|
Mouse   423 SECERSFTRRRSLLEHKKIHTGEKPYQCDACGKGFTRTSYLAQHQRSH 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42726NP_732017.3 C2H2 Zn finger 74..94 CDD:275368 5/21 (24%)
C2H2 Zn finger 103..123 CDD:275368 8/19 (42%)
COG5048 <112..288 CDD:227381 53/180 (29%)
C2H2 Zn finger 131..151 CDD:275368 6/19 (32%)
Chordopox_A33R 151..>254 CDD:283591 37/129 (29%)
C2H2 Zn finger 158..178 CDD:275368 7/19 (37%)
C2H2 Zn finger 187..207 CDD:275368 8/19 (42%)
C2H2 Zn finger 216..236 CDD:275368 8/19 (42%)
C2H2 Zn finger 244..264 CDD:275368 7/19 (37%)
C2H2 Zn finger 272..290 CDD:275368
Zkscan4NP_001034204.1 SCAN 47..155 CDD:128708
SCAN 47..135 CDD:280241
zf-C2H2 253..275 CDD:278523 5/21 (24%)
C2H2 Zn finger 255..275 CDD:275368 5/19 (26%)
zf-H2C2_2 268..290 CDD:290200 5/24 (21%)
C2H2 Zn finger 283..303 CDD:275368 8/19 (42%)
zf-H2C2_2 295..320 CDD:290200 7/24 (29%)
COG5048 <307..471 CDD:227381 48/165 (29%)
zf-C2H2 309..331 CDD:278523 6/21 (29%)
C2H2 Zn finger 311..331 CDD:275368 6/19 (32%)
zf-H2C2_2 323..348 CDD:290200 10/24 (42%)
C2H2 Zn finger 339..359 CDD:275368 7/19 (37%)
zf-H2C2_2 351..376 CDD:290200 11/25 (44%)
zf-C2H2 365..387 CDD:278523 9/21 (43%)
C2H2 Zn finger 367..387 CDD:275368 8/19 (42%)
C2H2 Zn finger 422..442 CDD:275368 8/19 (42%)
zf-H2C2_2 434..459 CDD:290200 8/24 (33%)
C2H2 Zn finger 450..470 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23226
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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