DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42726 and Cf2

DIOPT Version :10

Sequence 1:NP_732017.3 Gene:CG42726 / 318709 FlyBaseID:FBgn0261679 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster


Alignment Length:140 Identity:38/140 - (27%)
Similarity:59/140 - (42%) Gaps:23/140 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 KHLCPICQKVFRRKSSLASHLAIHSDLGLQFKCELCSKHFQNKANLNQHLRKHDKNNIRHMCKVC 219
            :|.||.|.|.|:...:||.|..||:                .:|:.....|.       :.|..|
  Fly   365 RHKCPDCPKTFKTPGTLAMHRKIHT----------------GEADATPKERP-------YTCSYC 406

  Fly   220 QKSFLRQTTLRLHMKRHSNRERQSCSLCGKSYNDPDALGRHLRQHKTAERYRCIQCDITINRKDN 284
            .|||.:..||:.|.:.|:..:...|..|.||::..|.|.:|:|.|...:.|.|..||....::..
  Fly   407 GKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRTHTGEKPYTCPYCDKRFTQRSA 471

  Fly   285 MLRHLRSMHP 294
            :..|...:||
  Fly   472 LTVHTTKLHP 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42726NP_732017.3 C2H2 Zn finger 74..94 CDD:275368
C2H2 Zn finger 103..123 CDD:275368
COG5048 <112..288 CDD:227381 35/132 (27%)
C2H2 Zn finger 131..151 CDD:275368
C2H2 Zn finger 158..178 CDD:275368 8/19 (42%)
C2H2 Zn finger 187..207 CDD:275368 2/19 (11%)
C2H2 Zn finger 216..236 CDD:275368 8/19 (42%)
C2H2 Zn finger 244..264 CDD:275368 8/19 (42%)
C2H2 Zn finger 272..290 CDD:275368 4/17 (24%)
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 35/129 (27%)
C2H2 Zn finger 368..388 CDD:275368 8/19 (42%)
C2H2 Zn finger 403..423 CDD:275368 8/19 (42%)
C2H2 Zn finger 431..451 CDD:275368 8/19 (42%)
zf-H2C2_2 443..468 CDD:463886 8/24 (33%)
C2H2 Zn finger 459..480 CDD:275368 4/20 (20%)
Blue background indicates that the domain is not in the aligned region.

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